MSI1 (Ochotona princeps)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSOPRG00000016879 T40062_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
MSI1
M167_0.6 		Homo sapiens UAGKWRG RNAcompete
Ray et al.(2013)
RNCMPT00176 		0.721
MSI1
M040_0.6 		Homo sapiens UAGUWRG RNAcompete
Ray et al.(2013)
RNCMPT00041 		0.721
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSOPRP00000015410 RRM 1 57
ENSOPRP00000015410 RRM 77 122

Links

Other RRM family RBPs
Other Ochotona princeps RBPs

28 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
MSI1 Pteropus vampyrus ENSPVAG00000002225 I 0.802
MSI1 Monodelphis domestica ENSMODG00000003189 N 0.798
MSI1 Felis catus ENSFCAG00000011007 I 0.795
Ame_R019333 Ailuropoda melanoleuca Ame_R019333 I 0.789
MSI1 Oryctolagus cuniculus ENSOCUG00000027716 I 0.789
MSI1 Macaca mulatta ENSMMUG00000031527 I 0.789
MSI1 Echinops telfairi ENSETEG00000004756 I 0.787
Msi1 Rattus norvegicus ENSRNOG00000001156 I 0.781
MSI2 Vicugna pacos ENSVPAG00000006837 N 0.777
LOC100053469 Equus caballus ENSECAG00000017526 I 0.758
Msi1 Mus musculus ENSMUSG00000054256 I 0.746
MSI1 Pan troglodytes ENSPTRG00000005531 I 0.732
MSI1 Anolis carolinensis ENSACAG00000002762 I 0.729
ENSPPYG00000005027 Pongo pygmaeus ENSPPYG00000005027 I 0.727
MSI1 Cavia porcellus ENSCPOG00000012361 I 0.721
MSI1 Tursiops truncatus ENSTTRG00000005663 I 0.721
MSI1 Homo sapiens ENSG00000135097 D 0.721
MSI1 Callithrix jacchus ENSCJAG00000008578 I 0.721
MSI1 Dasypus novemcinctus ENSDNOG00000005713 I 0.719
MSI1 Taeniopygia guttata ENSTGUG00000009534 I 0.714
MSI1 Canis familiaris ENSCAFG00000010283 I 0.704
CBF67566 Xenopus laevis CBF67566 I 0.700
AAA49919 Xenopus laevis AAA49919 I 0.700
msi1 Xenopus tropicalis ENSXETG00000012216 I 0.700
AAA49920 Xenopus laevis AAA49920 I 0.700
AAH82667 Xenopus laevis AAH82667 I 0.700
AAH84959 Xenopus laevis AAH84959 I 0.700
CBU92439 Xenopus laevis CBU92439 I 0.700