CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSRNOG00000022655
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000022655
T41153_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000046892
RRM
4
60
LFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSRGFGFLTYSCVEEVDAAVCARPHK
ENSRNOP00000046892
RRM
88
157
LYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEV
ENSRNOP00000048405
RRM
34
90
LFIGGLSFETTDDSLREHFEKWGTLTDCGNKRSRGFGFLTYSCVEEVDAAVCARPHK
ENSRNOP00000048405
RRM
118
187
LYVGGIKEDTEEYNLRGYFKKYGKIETIEVMEGRQSGKKRGFAFVTFDDHDTVDKILQKHHAINGNNCEV
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSRNOG00000030250
Rattus norvegicus
ENSRNOG00000030250
I
0.774
ENSRNOG00000042377
Rattus norvegicus
ENSRNOG00000042377
I
0.739
HNRNPA3
Microcebus murinus
ENSMICG00000005513
I
0.732
ENSPPYG00000001326
Pongo pygmaeus
ENSPPYG00000001326
I
0.723
HNRNPA3
Gorilla gorilla
ENSGGOG00000006130
I
0.723
HNRNPA3
Homo sapiens
ENSG00000170144
I
0.723
HNRNPA3
Pteropus vampyrus
ENSPVAG00000010380
I
0.723
HNRNPA3
Cavia porcellus
ENSCPOG00000011301
I
0.723
HNRNPA3
Macropus eugenii
ENSMEUG00000013622
I
0.723
HNRNPA3
Pan troglodytes
ENSPTRG00000012676
I
0.723
HNRNPA3
Myotis lucifugus
ENSMLUG00000003906
I
0.723
Hnrnpa3
Mus musculus
ENSMUSG00000059005
I
0.723
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.723
ENSMMUG00000001858
Macaca mulatta
ENSMMUG00000001858
I
0.723
ENSCPOG00000004251
Cavia porcellus
ENSCPOG00000004251
I
0.723
LOC100360986
Rattus norvegicus
ENSRNOG00000001556
I
0.723
HNRNPA3
Dasypus novemcinctus
ENSDNOG00000019022
I
0.723
LOC100411573
Callithrix jacchus
ENSCJAG00000023383
I
0.723
ROA3_RAT
Rattus norvegicus
ENSRNOG00000027001
I
0.723
HNRNPA3
Tursiops truncatus
ENSTTRG00000014225
I
0.723
HNRNPA3
Sus scrofa
ENSSSCG00000015988
I
0.723
ENSCAFG00000013497
Canis familiaris
ENSCAFG00000013497
I
0.723
LOC781499
Bos taurus
ENSBTAG00000021580
I
0.723
HNRNPA3
Felis catus
ENSFCAG00000012146
I
0.721
D3ZTB7_RAT
Rattus norvegicus
ENSRNOG00000031608
I
0.721
LOC100066794
Equus caballus
ENSECAG00000023237
I
0.721
HNRNPA3
Meleagris gallopavo
ENSMGAG00000009565
I
0.721
HNRNPA3
Anolis carolinensis
ENSACAG00000012234
I
0.721
HNRPA3
Gallus gallus
ENSGALG00000009250
I
0.721
HNRNPA3
Taeniopygia guttata
ENSTGUG00000008996
I
0.721
ENSRNOG00000033211
Rattus norvegicus
ENSRNOG00000033211
I
0.716
HNRNPA3
Oryctolagus cuniculus
ENSOCUG00000002743
I
0.716
Gm8991
Mus musculus
ENSMUSG00000059179
I
0.714
ENSRNOG00000043173
Rattus norvegicus
ENSRNOG00000043173
I
0.712
D3ZB98_RAT
Rattus norvegicus
ENSRNOG00000029641
I
0.711
D3ZK54_RAT
Rattus norvegicus
ENSRNOG00000025482
I
0.709
D3ZXA3_RAT
Rattus norvegicus
ENSRNOG00000038905
I
0.707
ENSMODG00000024570
Monodelphis domestica
ENSMODG00000024570
I
0.707
ENSEEUG00000000925
Erinaceus europaeus
ENSEEUG00000000925
I
0.706
ENSOCUG00000006431
Oryctolagus cuniculus
ENSOCUG00000006431
I
0.706
D4A8U2_RAT
Rattus norvegicus
ENSRNOG00000007252
I
0.702
D3ZNE1_RAT
Rattus norvegicus
ENSRNOG00000005671
I
0.701