D3ZB98_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000029641 T41202_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.761
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.761
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.761
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.739
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000043278 RRM 15 83
ENSRNOP00000043278 RRM 105 176

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

67 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.810
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.804
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.803
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.796
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.773
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.768
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.768
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.768
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.768
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.767
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.767
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.767
LOC100066794 Equus caballus ENSECAG00000023237 I 0.767
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.767
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.767
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.766
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.762
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.762
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.762
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.762
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.762
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.762
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.762
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.762
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.762
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.762
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.762
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.762
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.762
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.762
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.762
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.762
HNRNPA3 Homo sapiens ENSG00000170144 I 0.762
LOC781499 Bos taurus ENSBTAG00000021580 I 0.762
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.762
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.761
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.761
CBU92451 Xenopus laevis CBU92451 I 0.760
CBF67578 Xenopus laevis CBF67578 I 0.760
AAI69881 Xenopus laevis AAI69881 I 0.760
AAA49950 Xenopus laevis AAA49950 I 0.760
P51992 Xenopus laevis P51992 I 0.760
Gm8991 Mus musculus ENSMUSG00000059179 I 0.760
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.757
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.755
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.754
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.753
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.748
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.747
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.743
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.740
P51968 Xenopus laevis P51968 I 0.740
AAA49949 Xenopus laevis AAA49949 I 0.740
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.736
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.728
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.728
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.727
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.727
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.720
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.712
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.711
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.711
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.711
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.707
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.705
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.704
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.702