D4A8U2_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000007252 T41053_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.793
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.793
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.793
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.779
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000009539 RRM 15 84
ENSRNOP00000009539 RRM 106 174
ENSRNOP00000061392 RRM 15 84
ENSRNOP00000061392 RRM 106 173

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.821
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.818
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.800
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.796
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.796
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.793
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.791
LOC100066794 Equus caballus ENSECAG00000023237 I 0.791
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.790
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.787
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.786
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.785
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.784
Gm8991 Mus musculus ENSMUSG00000059179 I 0.784
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.784
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.779
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.779
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.779
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.779
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.779
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.779
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.779
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.779
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.779
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.779
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.779
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.779
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.779
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.779
HNRNPA3 Homo sapiens ENSG00000170144 I 0.779
LOC781499 Bos taurus ENSBTAG00000021580 I 0.779
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.779
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.779
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.779
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.777
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.777
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.777
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.777
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.773
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.772
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.770
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.770
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.770
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.768
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.764
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.761
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.752
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.750
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.750
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.750
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.745
AAA49949 Xenopus laevis AAA49949 I 0.743
P51968 Xenopus laevis P51968 I 0.743
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.736
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.735
CBU92451 Xenopus laevis CBU92451 I 0.733
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.733
CBF67578 Xenopus laevis CBF67578 I 0.733
AAI69881 Xenopus laevis AAI69881 I 0.733
AAA49950 Xenopus laevis AAA49950 I 0.733
P51992 Xenopus laevis P51992 I 0.733
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.733
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.726
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.725
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.720
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.719
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.716
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.716
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.709
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.707
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.706
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.703
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.703
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.703
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.703
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.703
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.702