ENSRNOG00000042377 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000042377 T41242_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.753
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.753
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.753
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.733
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000057810 RRM 20 89
ENSRNOP00000057810 RRM 111 181

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.830
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.824
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.818
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.818
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.816
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.810
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.804
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.788
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.783
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.779
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.778
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.776
LOC100066794 Equus caballus ENSECAG00000023237 I 0.775
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.775
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.775
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.770
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.770
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.770
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.770
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.770
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.770
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.770
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.770
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.770
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.770
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.770
HNRNPA3 Homo sapiens ENSG00000170144 I 0.770
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.770
LOC781499 Bos taurus ENSBTAG00000021580 I 0.770
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.770
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.770
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.770
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.770
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.768
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.768
Gm8991 Mus musculus ENSMUSG00000059179 I 0.768
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.768
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.763
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.762
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.762
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.759
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.755
CBF67578 Xenopus laevis CBF67578 I 0.755
AAA49950 Xenopus laevis AAA49950 I 0.755
AAI69881 Xenopus laevis AAI69881 I 0.755
CBU92451 Xenopus laevis CBU92451 I 0.755
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.755
P51992 Xenopus laevis P51992 I 0.755
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.752
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.750
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.748
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.748
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.747
P51968 Xenopus laevis P51968 I 0.742
AAA49949 Xenopus laevis AAA49949 I 0.742
D4A6Z0_RAT Rattus norvegicus ENSRNOG00000042924 N 0.741
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.739
D3ZNE1_RAT Rattus norvegicus ENSRNOG00000005671 I 0.737
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.737
HNRNPA3 Canis familiaris ENSCAFG00000015889 I 0.728
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.727
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.722
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.722
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.720
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.717
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.715
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.713
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.713
ENSMMUG00000013424 Macaca mulatta ENSMMUG00000013424 I 0.712
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.711
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.705
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.702