D3ZNE1_RAT (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000005671 T41042_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPA1
M022_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00022 		0.810
HNRNPA1
M312_0.6 		Homo sapiens Sequence logo not available UAGGGW RIP-chip
Cook et al.(2011)
560_17925491 		0.810
HNRNPA1
M271_0.6 		Homo sapiens UAGGGW SELEX
Cook et al.(2011)
23_7510636 		0.810
HNRNPA1L2
M023_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00023 		0.796
HNRNPA2B1
M024_0.6 		Homo sapiens DUAGGGW RNAcompete
Ray et al.(2013)
RNCMPT00024 		0.732
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000000770 RRM 15 83
ENSRNOP00000000770 RRM 105 175
ENSRNOP00000053818 RRM 15 83
ENSRNOP00000053818 RRM 105 175

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

217 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSCPOG00000004251 Cavia porcellus ENSCPOG00000004251 I 0.923
HNRNPA3 Anolis carolinensis ENSACAG00000012234 I 0.923
LOC100066794 Equus caballus ENSECAG00000023237 I 0.923
HNRNPA3 Felis catus ENSFCAG00000012146 I 0.923
ENSPPYG00000001012 Pongo pygmaeus ENSPPYG00000001012 I 0.922
HNRNPA3 Macropus eugenii ENSMEUG00000013622 I 0.916
HNRNPA3 Tursiops truncatus ENSTTRG00000014225 I 0.916
HNRNPA3 Sus scrofa ENSSSCG00000015988 I 0.916
LOC781499 Bos taurus ENSBTAG00000021580 I 0.916
HNRNPA3 Cavia porcellus ENSCPOG00000011301 I 0.916
LOC100411573 Callithrix jacchus ENSCJAG00000023383 I 0.916
ENSMMUG00000001858 Macaca mulatta ENSMMUG00000001858 I 0.916
HNRNPA3 Monodelphis domestica ENSMODG00000019803 I 0.916
Hnrnpa3 Mus musculus ENSMUSG00000059005 I 0.916
HNRNPA3 Homo sapiens ENSG00000170144 I 0.916
ENSCAFG00000013497 Canis familiaris ENSCAFG00000013497 I 0.916
HNRNPA3 Myotis lucifugus ENSMLUG00000003906 I 0.916
HNRNPA3 Dasypus novemcinctus ENSDNOG00000019022 I 0.916
HNRNPA3 Pteropus vampyrus ENSPVAG00000010380 I 0.916
HNRNPA3 Pan troglodytes ENSPTRG00000012676 I 0.916
LOC100360986 Rattus norvegicus ENSRNOG00000001556 I 0.916
HNRNPA3 Gorilla gorilla ENSGGOG00000006130 I 0.916
ROA3_RAT Rattus norvegicus ENSRNOG00000027001 I 0.916
Gm8991 Mus musculus ENSMUSG00000059179 I 0.915
HNRPA3 Gallus gallus ENSGALG00000009250 I 0.915
HNRNPA3 Meleagris gallopavo ENSMGAG00000009565 I 0.915
HNRNPA3 Taeniopygia guttata ENSTGUG00000008996 I 0.915
D3ZXA3_RAT Rattus norvegicus ENSRNOG00000038905 I 0.915
HNRNPA3 Oryctolagus cuniculus ENSOCUG00000002743 I 0.909
ENSCJAG00000008584 Callithrix jacchus ENSCJAG00000008584 I 0.908
D3ZTB7_RAT Rattus norvegicus ENSRNOG00000031608 I 0.894
AAI69881 Xenopus laevis AAI69881 I 0.888
CBU92451 Xenopus laevis CBU92451 I 0.888
P51992 Xenopus laevis P51992 I 0.888
AAA49950 Xenopus laevis AAA49950 I 0.888
CBF67578 Xenopus laevis CBF67578 I 0.888
hnrnpa3 Xenopus tropicalis ENSXETG00000001806 I 0.887
AAA49949 Xenopus laevis AAA49949 I 0.880
ENSRNOG00000013650 Rattus norvegicus ENSRNOG00000013650 I 0.880
P51968 Xenopus laevis P51968 I 0.880
ENSPPYG00000012967 Pongo pygmaeus ENSPPYG00000012967 I 0.867
HNRNPA3 Microcebus murinus ENSMICG00000005513 I 0.860
HNRNPA3 Sorex araneus ENSSARG00000007605 I 0.859
HNRNPA3 Loxodonta africana ENSLAFG00000027712 I 0.846
ENSSSCG00000015989 Sus scrofa ENSSSCG00000015989 I 0.846
D3ZX95_RAT Rattus norvegicus ENSRNOG00000027006 I 0.846
ENSGGOG00000022020 Gorilla gorilla ENSGGOG00000022020 I 0.845
ENSDORG00000011155 Dipodomys ordii ENSDORG00000011155 I 0.839
ENSCJAG00000006928 Callithrix jacchus ENSCJAG00000006928 I 0.838
ENSPTRG00000018253 Pan troglodytes ENSPTRG00000018253 I 0.838
Ame_R015370 Ailuropoda melanoleuca Ame_R015370 I 0.837
ENSRNOG00000030901 Rattus norvegicus ENSRNOG00000030901 I 0.831
ENSGGOG00000025446 Gorilla gorilla ENSGGOG00000025446 I 0.831
LOC710473 Macaca mulatta ENSMMUG00000029402 I 0.817
ENSACAG00000007169 Anolis carolinensis ENSACAG00000007169 I 0.817
ENSPPYG00000016683 Pongo pygmaeus ENSPPYG00000016683 I 0.817
ENSLAFG00000029587 Loxodonta africana ENSLAFG00000029587 I 0.817
ENSCJAG00000033856 Callithrix jacchus ENSCJAG00000033856 I 0.810
ENSOCUG00000013350 Oryctolagus cuniculus ENSOCUG00000013350 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000005035 I 0.810
XM_534786.2 Canis familiaris ENSCAFG00000006580 I 0.810
ENSSSCG00000000288 Sus scrofa ENSSSCG00000000288 I 0.810
ENSMGAG00000007630 Meleagris gallopavo ENSMGAG00000007630 I 0.810
ENSMLUG00000000648 Myotis lucifugus ENSMLUG00000000648 I 0.810
LOC710473 Macaca mulatta ENSMMUG00000012989 I 0.810
ENSMUSG00000021927 Mus musculus ENSMUSG00000021927 I 0.810
LOC100397230 Callithrix jacchus ENSCJAG00000018864 I 0.810
Hnrnpa1 Mus musculus ENSMUSG00000046434 I 0.810
ENSPVAG00000000322 Pteropus vampyrus ENSPVAG00000000322 I 0.810
ENSTBEG00000008238 Tupaia belangeri ENSTBEG00000008238 I 0.810
ENSFCAG00000010150 Felis catus ENSFCAG00000010150 I 0.810
ENSCJAG00000019479 Callithrix jacchus ENSCJAG00000019479 I 0.810
ENSTTRG00000004505 Tursiops truncatus ENSTTRG00000004505 I 0.810
ENSG00000215492 Homo sapiens ENSG00000215492 I 0.810
HNRNPA1L2 Pan troglodytes ENSPTRG00000032520 I 0.810
Ame_R011792 Ailuropoda melanoleuca Ame_R011792 I 0.810
Hnrnpa1 Rattus norvegicus ENSRNOG00000036839 I 0.810
ENSDNOG00000009228 Dasypus novemcinctus ENSDNOG00000009228 I 0.810
Q6DTK6_HORSE Equus caballus ENSECAG00000008676 I 0.810
ROA1_BOVIN Bos taurus ENSBTAG00000001553 I 0.810
HNRNPA1 Homo sapiens ENSG00000135486 D 0.810
HNRNPA1 Gorilla gorilla ENSGGOG00000003040 I 0.810
ENSOCUG00000023674 Oryctolagus cuniculus ENSOCUG00000023674 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000031363 I 0.810
ROA1_PANTR Pan troglodytes ENSPTRG00000028756 I 0.810
ENSOCUG00000023444 Oryctolagus cuniculus ENSOCUG00000023444 I 0.803
ENSOCUG00000022568 Oryctolagus cuniculus ENSOCUG00000022568 I 0.803
ENSOCUG00000010985 Oryctolagus cuniculus ENSOCUG00000010985 I 0.803
LOC710473 Macaca mulatta ENSMMUG00000007887 I 0.803
ENSOPRG00000006107 Ochotona princeps ENSOPRG00000006107 I 0.803
LOC100397230 Callithrix jacchus ENSCJAG00000004031 I 0.803
HNRNPA1L2 Homo sapiens ENSG00000139675 D 0.796
ENSMLUG00000003232 Myotis lucifugus ENSMLUG00000003232 I 0.796
ENSCAFG00000010153 Canis familiaris ENSCAFG00000010153 I 0.796
ENSOCUG00000023322 Oryctolagus cuniculus ENSOCUG00000023322 I 0.796
ENSOCUG00000028124 Oryctolagus cuniculus ENSOCUG00000028124 I 0.796
ENSGGOG00000025381 Gorilla gorilla ENSGGOG00000025381 I 0.796
ENSOCUG00000021007 Oryctolagus cuniculus ENSOCUG00000021007 I 0.796
ENSLAFG00000026657 Loxodonta africana ENSLAFG00000026657 I 0.796
ENSEEUG00000006130 Erinaceus europaeus ENSEEUG00000006130 I 0.796
hnrnpa1 Xenopus tropicalis ENSXETG00000021277 I 0.789
hnrnpa3 Danio rerio ENSDARG00000059351 I 0.789
ENSCPOG00000021077 Cavia porcellus ENSCPOG00000021077 I 0.789
LOC100413454 Callithrix jacchus ENSCJAG00000009030 I 0.789
LOC710473 Macaca mulatta ENSMMUG00000007928 I 0.789
LOC100409067 Callithrix jacchus ENSCJAG00000003245 I 0.789
ENSOCUG00000021006 Oryctolagus cuniculus ENSOCUG00000021006 I 0.789
ROA1_MACMU Macaca mulatta ENSMMUG00000031613 I 0.789
LOC100410389 Callithrix jacchus ENSCJAG00000023392 I 0.789
ENSOGAG00000009945 Otolemur garnettii ENSOGAG00000009945 I 0.789
ENSGACG00000009435 Gasterosteus aculeatus ENSGACG00000009435 I 0.782
ENSCJAG00000031552 Callithrix jacchus ENSCJAG00000031552 I 0.782
ENSOCUG00000022668 Oryctolagus cuniculus ENSOCUG00000022668 I 0.782
CBF67672 Xenopus laevis CBF67672 I 0.782
AAH72090 Xenopus laevis AAH72090 I 0.782
CBU92546 Xenopus laevis CBU92546 I 0.782
AAH45260 Xenopus laevis AAH45260 I 0.782
XM_852631.1 Canis familiaris ENSCAFG00000023680 I 0.782
Q1KKS6_FUGRU Takifugu rubripes ENSTRUG00000017504 I 0.776
ENSRNOG00000039436 Rattus norvegicus ENSRNOG00000039436 I 0.775
ENSORLG00000008001 Oryzias latipes ENSORLG00000008001 I 0.775
ENSLAFG00000030769 Loxodonta africana ENSLAFG00000030769 I 0.775
XM_854536.1 Canis familiaris ENSCAFG00000005046 I 0.775
D4A491_RAT Rattus norvegicus ENSRNOG00000029531 I 0.775
ENSRNOG00000033182 Rattus norvegicus ENSRNOG00000033182 I 0.771
LOC785445 Bos taurus ENSBTAG00000025621 I 0.769
HNRNPA3 Oryzias latipes ENSORLG00000017561 I 0.769
Q1KKU4_FUGRU Takifugu rubripes ENSTRUG00000002190 I 0.768
ENSEEUG00000000494 Erinaceus europaeus ENSEEUG00000000494 I 0.768
ENSTNIG00000015047 Tetraodon nigroviridis ENSTNIG00000015047 I 0.768
D4A2D2_RAT Rattus norvegicus ENSRNOG00000021986 I 0.768
ENSRNOG00000005951 Rattus norvegicus ENSRNOG00000005951 I 0.768
ENSPPYG00000017853 Pongo pygmaeus ENSPPYG00000017853 I 0.768
AAA49741 Xenopus laevis AAA49741 I 0.768
CBF67555 Xenopus laevis CBF67555 I 0.768
P17130 Xenopus laevis P17130 I 0.768
XM_855847.1 Canis familiaris ENSCAFG00000006327 I 0.768
ENSCAFG00000006784 Canis familiaris ENSCAFG00000006784 I 0.768
CBU92428 Xenopus laevis CBU92428 I 0.768
AAA49742 Xenopus laevis AAA49742 I 0.768
HNRNPA3 Gasterosteus aculeatus ENSGACG00000004477 I 0.762
ENSRNOG00000011100 Rattus norvegicus ENSRNOG00000011100 I 0.762
ENSMMUG00000007695 Macaca mulatta ENSMMUG00000007695 I 0.762
ENSTBEG00000016272 Tupaia belangeri ENSTBEG00000016272 I 0.762
HNRNPA3 Tetraodon nigroviridis ENSTNIG00000016958 I 0.761
ENSCJAG00000032417 Callithrix jacchus ENSCJAG00000032417 I 0.761
ENSCJAG00000004902 Callithrix jacchus ENSCJAG00000004902 I 0.755
ENSCJAG00000009723 Callithrix jacchus ENSCJAG00000009723 I 0.754
ENSCAFG00000011035 Canis familiaris ENSCAFG00000011035 I 0.750
ENSOCUG00000022627 Oryctolagus cuniculus ENSOCUG00000022627 I 0.748
ENSCJAG00000010169 Callithrix jacchus ENSCJAG00000010169 I 0.748
XP_541811.1 Canis familiaris ENSCAFG00000006586 I 0.748
Hnrnpa1 Dipodomys ordii ENSDORG00000010628 I 0.746
ENSSARG00000008946 Sorex araneus ENSSARG00000008946 I 0.746
ENSMLUG00000000788 Myotis lucifugus ENSMLUG00000000788 I 0.743
LOC100397230 Callithrix jacchus ENSCJAG00000014791 I 0.741
ENSTBEG00000012511 Tupaia belangeri ENSTBEG00000012511 I 0.741
ENSPPYG00000001326 Pongo pygmaeus ENSPPYG00000001326 I 0.740
hnrnpa1 Danio rerio ENSDARG00000036675 I 0.739
ENSRNOG00000042377 Rattus norvegicus ENSRNOG00000042377 I 0.737
ENSCAFG00000015319 Canis familiaris ENSCAFG00000015319 I 0.736
ENSCJAG00000001353 Callithrix jacchus ENSCJAG00000001353 I 0.736
ENSTTRG00000015563 Tursiops truncatus ENSTTRG00000015563 I 0.735
ENSRNOG00000030250 Rattus norvegicus ENSRNOG00000030250 I 0.735
ENSETEG00000015332 Echinops telfairi ENSETEG00000015332 I 0.734
ENSCJAG00000035202 Callithrix jacchus ENSCJAG00000035202 I 0.734
D4AD23_RAT Rattus norvegicus ENSRNOG00000025891 I 0.734
ENSCJAG00000000095 Callithrix jacchus ENSCJAG00000000095 I 0.734
ENSMMUG00000031948 Macaca mulatta ENSMMUG00000031948 I 0.734
D4A8U2_RAT Rattus norvegicus ENSRNOG00000007252 I 0.733
ENSSTOG00000015259 Spermophilus tridecemlineatus ENSSTOG00000015259 I 0.732
ENSCAFG00000007879 Canis familiaris ENSCAFG00000007879 I 0.731
ENSCAFG00000019118 Canis familiaris ENSCAFG00000019118 I 0.731
ENSCAFG00000019104 Canis familiaris ENSCAFG00000019104 I 0.729
LOC100054206 Equus caballus ENSECAG00000006699 I 0.729
ENSCAFG00000004202 Canis familiaris ENSCAFG00000004202 I 0.729
D3ZB98_RAT Rattus norvegicus ENSRNOG00000029641 I 0.728
ENSRNOG00000021280 Rattus norvegicus ENSRNOG00000021280 I 0.727
ENSCAFG00000025274 Canis familiaris ENSCAFG00000025274 I 0.727
ENSCJAG00000016375 Callithrix jacchus ENSCJAG00000016375 I 0.727
ENSRNOG00000033211 Rattus norvegicus ENSRNOG00000033211 I 0.727
ENSCJAG00000033784 Callithrix jacchus ENSCJAG00000033784 I 0.725
ENSOCUG00000006431 Oryctolagus cuniculus ENSOCUG00000006431 I 0.724
ENSCAFG00000017316 Canis familiaris ENSCAFG00000017316 I 0.721
ENSGGOG00000025827 Gorilla gorilla ENSGGOG00000025827 I 0.720
ENSCAFG00000002059 Canis familiaris ENSCAFG00000002059 I 0.720
ENSCAFG00000005207 Canis familiaris ENSCAFG00000005207 I 0.720
ENSCJAG00000001737 Callithrix jacchus ENSCJAG00000001737 I 0.720
ENSCAFG00000014094 Canis familiaris ENSCAFG00000014094 I 0.720
Ame_R018030 Ailuropoda melanoleuca Ame_R018030 I 0.720
ENSRNOG00000024652 Rattus norvegicus ENSRNOG00000024652 I 0.720
ENSRNOG00000043173 Rattus norvegicus ENSRNOG00000043173 I 0.720
ENSMODG00000024570 Monodelphis domestica ENSMODG00000024570 I 0.720
ENSCAFG00000005308 Canis familiaris ENSCAFG00000005308 I 0.715
ENSCAFG00000020238 Canis familiaris ENSCAFG00000020238 I 0.715
D4ACP9_RAT Rattus norvegicus ENSRNOG00000021929 I 0.715
XP_848548.1 Canis familiaris ENSCAFG00000016313 I 0.713
ENSCJAG00000017130 Callithrix jacchus ENSCJAG00000017130 I 0.713
ENSCJAG00000020672 Callithrix jacchus ENSCJAG00000020672 I 0.713
ENSCJAG00000007250 Callithrix jacchus ENSCJAG00000007250 I 0.713
ENSMMUG00000018397 Macaca mulatta ENSMMUG00000018397 I 0.713
ENSCAFG00000023240 Canis familiaris ENSCAFG00000023240 I 0.711
zgc:66127 Danio rerio ENSDARG00000011020 I 0.711
D3ZB90_RAT Rattus norvegicus ENSRNOG00000038392 N 0.711
XM_001106745.1 Macaca mulatta ENSMMUG00000031809 I 0.708
ENSMICG00000009289 Microcebus murinus ENSMICG00000009289 I 0.708
ENSCAFG00000001973 Canis familiaris ENSCAFG00000001973 I 0.708
D3ZK54_RAT Rattus norvegicus ENSRNOG00000025482 I 0.707
ENSEEUG00000000925 Erinaceus europaeus ENSEEUG00000000925 I 0.707
ENSCAFG00000007198 Canis familiaris ENSCAFG00000007198 I 0.707
ENSGGOG00000027879 Gorilla gorilla ENSGGOG00000027879 I 0.706
ENSPCAG00000001867 Procavia capensis ENSPCAG00000001867 I 0.704
ENSMODG00000023422 Monodelphis domestica ENSMODG00000023422 I 0.701
ENSCAFG00000018186 Canis familiaris ENSCAFG00000018186 I 0.701
ENSCAFG00000005164 Canis familiaris ENSCAFG00000005164 I 0.701
ENSRNOG00000022655 Rattus norvegicus ENSRNOG00000022655 N 0.701