CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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D3ZNE1_RAT
(
Rattus norvegicus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSRNOG00000005671
T41042_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
HNRNPA1
M312_0.6
Homo sapiens
Sequence logo not available
UAGGGW
RIP-chip
Cook et al.(2011)
560_17925491
0.810
HNRNPA1
M271_0.6
Homo sapiens
UAGGGW
SELEX
Cook et al.(2011)
23_7510636
0.810
HNRNPA1
M022_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00022
0.810
HNRNPA1L2
M023_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00023
0.796
HNRNPA2B1
M024_0.6
Homo sapiens
DUAGGGW
RNAcompete
Ray et al.(2013)
RNCMPT00024
0.732
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSRNOP00000000770
RRM
15
83
LFIGGLSFKTTDDSLREHFEKWATLTDCVVRDPQTKRSRGFGFVTYSCVEEVDAAMCAGPHKVDGREVE
ENSRNOP00000000770
RRM
105
175
IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKCHTINEHNCEV
ENSRNOP00000053818
RRM
15
83
LFIGGLSFKTTDDSLREHFEKWATLTDCVVRDPQTKRSRGFGFVTYSCVEEVDAAMCAGPHKVDGREVE
ENSRNOP00000053818
RRM
105
175
IFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKCHTINEHNCEV
Links
Other
RRM
family RBPs
Other
Rattus norvegicus
RBPs
217 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ENSCPOG00000004251
Cavia porcellus
ENSCPOG00000004251
I
0.923
HNRNPA3
Anolis carolinensis
ENSACAG00000012234
I
0.923
LOC100066794
Equus caballus
ENSECAG00000023237
I
0.923
HNRNPA3
Felis catus
ENSFCAG00000012146
I
0.923
ENSPPYG00000001012
Pongo pygmaeus
ENSPPYG00000001012
I
0.922
HNRNPA3
Macropus eugenii
ENSMEUG00000013622
I
0.916
HNRNPA3
Tursiops truncatus
ENSTTRG00000014225
I
0.916
HNRNPA3
Sus scrofa
ENSSSCG00000015988
I
0.916
LOC781499
Bos taurus
ENSBTAG00000021580
I
0.916
HNRNPA3
Cavia porcellus
ENSCPOG00000011301
I
0.916
LOC100411573
Callithrix jacchus
ENSCJAG00000023383
I
0.916
ENSMMUG00000001858
Macaca mulatta
ENSMMUG00000001858
I
0.916
HNRNPA3
Monodelphis domestica
ENSMODG00000019803
I
0.916
Hnrnpa3
Mus musculus
ENSMUSG00000059005
I
0.916
HNRNPA3
Homo sapiens
ENSG00000170144
I
0.916
ENSCAFG00000013497
Canis familiaris
ENSCAFG00000013497
I
0.916
HNRNPA3
Myotis lucifugus
ENSMLUG00000003906
I
0.916
HNRNPA3
Dasypus novemcinctus
ENSDNOG00000019022
I
0.916
HNRNPA3
Pteropus vampyrus
ENSPVAG00000010380
I
0.916
HNRNPA3
Pan troglodytes
ENSPTRG00000012676
I
0.916
LOC100360986
Rattus norvegicus
ENSRNOG00000001556
I
0.916
HNRNPA3
Gorilla gorilla
ENSGGOG00000006130
I
0.916
ROA3_RAT
Rattus norvegicus
ENSRNOG00000027001
I
0.916
Gm8991
Mus musculus
ENSMUSG00000059179
I
0.915
HNRPA3
Gallus gallus
ENSGALG00000009250
I
0.915
HNRNPA3
Meleagris gallopavo
ENSMGAG00000009565
I
0.915
HNRNPA3
Taeniopygia guttata
ENSTGUG00000008996
I
0.915
D3ZXA3_RAT
Rattus norvegicus
ENSRNOG00000038905
I
0.915
HNRNPA3
Oryctolagus cuniculus
ENSOCUG00000002743
I
0.909
ENSCJAG00000008584
Callithrix jacchus
ENSCJAG00000008584
I
0.908
D3ZTB7_RAT
Rattus norvegicus
ENSRNOG00000031608
I
0.894
AAI69881
Xenopus laevis
AAI69881
I
0.888
CBU92451
Xenopus laevis
CBU92451
I
0.888
P51992
Xenopus laevis
P51992
I
0.888
AAA49950
Xenopus laevis
AAA49950
I
0.888
CBF67578
Xenopus laevis
CBF67578
I
0.888
hnrnpa3
Xenopus tropicalis
ENSXETG00000001806
I
0.887
AAA49949
Xenopus laevis
AAA49949
I
0.880
ENSRNOG00000013650
Rattus norvegicus
ENSRNOG00000013650
I
0.880
P51968
Xenopus laevis
P51968
I
0.880
ENSPPYG00000012967
Pongo pygmaeus
ENSPPYG00000012967
I
0.867
HNRNPA3
Microcebus murinus
ENSMICG00000005513
I
0.860
HNRNPA3
Sorex araneus
ENSSARG00000007605
I
0.859
HNRNPA3
Loxodonta africana
ENSLAFG00000027712
I
0.846
ENSSSCG00000015989
Sus scrofa
ENSSSCG00000015989
I
0.846
D3ZX95_RAT
Rattus norvegicus
ENSRNOG00000027006
I
0.846
ENSGGOG00000022020
Gorilla gorilla
ENSGGOG00000022020
I
0.845
ENSDORG00000011155
Dipodomys ordii
ENSDORG00000011155
I
0.839
ENSCJAG00000006928
Callithrix jacchus
ENSCJAG00000006928
I
0.838
ENSPTRG00000018253
Pan troglodytes
ENSPTRG00000018253
I
0.838
Ame_R015370
Ailuropoda melanoleuca
Ame_R015370
I
0.837
ENSRNOG00000030901
Rattus norvegicus
ENSRNOG00000030901
I
0.831
ENSGGOG00000025446
Gorilla gorilla
ENSGGOG00000025446
I
0.831
LOC710473
Macaca mulatta
ENSMMUG00000029402
I
0.817
ENSACAG00000007169
Anolis carolinensis
ENSACAG00000007169
I
0.817
ENSPPYG00000016683
Pongo pygmaeus
ENSPPYG00000016683
I
0.817
ENSLAFG00000029587
Loxodonta africana
ENSLAFG00000029587
I
0.817
ENSCJAG00000033856
Callithrix jacchus
ENSCJAG00000033856
I
0.810
ENSOCUG00000013350
Oryctolagus cuniculus
ENSOCUG00000013350
I
0.810
ROA1_PANTR
Pan troglodytes
ENSPTRG00000005035
I
0.810
XM_534786.2
Canis familiaris
ENSCAFG00000006580
I
0.810
ENSSSCG00000000288
Sus scrofa
ENSSSCG00000000288
I
0.810
ENSMGAG00000007630
Meleagris gallopavo
ENSMGAG00000007630
I
0.810
ENSMLUG00000000648
Myotis lucifugus
ENSMLUG00000000648
I
0.810
LOC710473
Macaca mulatta
ENSMMUG00000012989
I
0.810
ENSMUSG00000021927
Mus musculus
ENSMUSG00000021927
I
0.810
LOC100397230
Callithrix jacchus
ENSCJAG00000018864
I
0.810
Hnrnpa1
Mus musculus
ENSMUSG00000046434
I
0.810
ENSPVAG00000000322
Pteropus vampyrus
ENSPVAG00000000322
I
0.810
ENSTBEG00000008238
Tupaia belangeri
ENSTBEG00000008238
I
0.810
ENSFCAG00000010150
Felis catus
ENSFCAG00000010150
I
0.810
ENSCJAG00000019479
Callithrix jacchus
ENSCJAG00000019479
I
0.810
ENSTTRG00000004505
Tursiops truncatus
ENSTTRG00000004505
I
0.810
ENSG00000215492
Homo sapiens
ENSG00000215492
I
0.810
HNRNPA1L2
Pan troglodytes
ENSPTRG00000032520
I
0.810
Ame_R011792
Ailuropoda melanoleuca
Ame_R011792
I
0.810
Hnrnpa1
Rattus norvegicus
ENSRNOG00000036839
I
0.810
ENSDNOG00000009228
Dasypus novemcinctus
ENSDNOG00000009228
I
0.810
Q6DTK6_HORSE
Equus caballus
ENSECAG00000008676
I
0.810
ROA1_BOVIN
Bos taurus
ENSBTAG00000001553
I
0.810
HNRNPA1
Homo sapiens
ENSG00000135486
D
0.810
HNRNPA1
Gorilla gorilla
ENSGGOG00000003040
I
0.810
ENSOCUG00000023674
Oryctolagus cuniculus
ENSOCUG00000023674
I
0.810
ROA1_PANTR
Pan troglodytes
ENSPTRG00000031363
I
0.810
ROA1_PANTR
Pan troglodytes
ENSPTRG00000028756
I
0.810
ENSOCUG00000023444
Oryctolagus cuniculus
ENSOCUG00000023444
I
0.803
ENSOCUG00000022568
Oryctolagus cuniculus
ENSOCUG00000022568
I
0.803
ENSOCUG00000010985
Oryctolagus cuniculus
ENSOCUG00000010985
I
0.803
LOC710473
Macaca mulatta
ENSMMUG00000007887
I
0.803
ENSOPRG00000006107
Ochotona princeps
ENSOPRG00000006107
I
0.803
LOC100397230
Callithrix jacchus
ENSCJAG00000004031
I
0.803
HNRNPA1L2
Homo sapiens
ENSG00000139675
D
0.796
ENSMLUG00000003232
Myotis lucifugus
ENSMLUG00000003232
I
0.796
ENSCAFG00000010153
Canis familiaris
ENSCAFG00000010153
I
0.796
ENSOCUG00000023322
Oryctolagus cuniculus
ENSOCUG00000023322
I
0.796
ENSOCUG00000028124
Oryctolagus cuniculus
ENSOCUG00000028124
I
0.796
ENSGGOG00000025381
Gorilla gorilla
ENSGGOG00000025381
I
0.796
ENSOCUG00000021007
Oryctolagus cuniculus
ENSOCUG00000021007
I
0.796
ENSLAFG00000026657
Loxodonta africana
ENSLAFG00000026657
I
0.796
ENSEEUG00000006130
Erinaceus europaeus
ENSEEUG00000006130
I
0.796
hnrnpa1
Xenopus tropicalis
ENSXETG00000021277
I
0.789
hnrnpa3
Danio rerio
ENSDARG00000059351
I
0.789
ENSCPOG00000021077
Cavia porcellus
ENSCPOG00000021077
I
0.789
LOC100413454
Callithrix jacchus
ENSCJAG00000009030
I
0.789
LOC710473
Macaca mulatta
ENSMMUG00000007928
I
0.789
LOC100409067
Callithrix jacchus
ENSCJAG00000003245
I
0.789
ENSOCUG00000021006
Oryctolagus cuniculus
ENSOCUG00000021006
I
0.789
ROA1_MACMU
Macaca mulatta
ENSMMUG00000031613
I
0.789
LOC100410389
Callithrix jacchus
ENSCJAG00000023392
I
0.789
ENSOGAG00000009945
Otolemur garnettii
ENSOGAG00000009945
I
0.789
ENSGACG00000009435
Gasterosteus aculeatus
ENSGACG00000009435
I
0.782
ENSCJAG00000031552
Callithrix jacchus
ENSCJAG00000031552
I
0.782
ENSOCUG00000022668
Oryctolagus cuniculus
ENSOCUG00000022668
I
0.782
CBF67672
Xenopus laevis
CBF67672
I
0.782
AAH72090
Xenopus laevis
AAH72090
I
0.782
CBU92546
Xenopus laevis
CBU92546
I
0.782
AAH45260
Xenopus laevis
AAH45260
I
0.782
XM_852631.1
Canis familiaris
ENSCAFG00000023680
I
0.782
Q1KKS6_FUGRU
Takifugu rubripes
ENSTRUG00000017504
I
0.776
ENSRNOG00000039436
Rattus norvegicus
ENSRNOG00000039436
I
0.775
ENSORLG00000008001
Oryzias latipes
ENSORLG00000008001
I
0.775
ENSLAFG00000030769
Loxodonta africana
ENSLAFG00000030769
I
0.775
XM_854536.1
Canis familiaris
ENSCAFG00000005046
I
0.775
D4A491_RAT
Rattus norvegicus
ENSRNOG00000029531
I
0.775
ENSRNOG00000033182
Rattus norvegicus
ENSRNOG00000033182
I
0.771
LOC785445
Bos taurus
ENSBTAG00000025621
I
0.769
HNRNPA3
Oryzias latipes
ENSORLG00000017561
I
0.769
Q1KKU4_FUGRU
Takifugu rubripes
ENSTRUG00000002190
I
0.768
ENSEEUG00000000494
Erinaceus europaeus
ENSEEUG00000000494
I
0.768
ENSTNIG00000015047
Tetraodon nigroviridis
ENSTNIG00000015047
I
0.768
D4A2D2_RAT
Rattus norvegicus
ENSRNOG00000021986
I
0.768
ENSRNOG00000005951
Rattus norvegicus
ENSRNOG00000005951
I
0.768
ENSPPYG00000017853
Pongo pygmaeus
ENSPPYG00000017853
I
0.768
AAA49741
Xenopus laevis
AAA49741
I
0.768
CBF67555
Xenopus laevis
CBF67555
I
0.768
P17130
Xenopus laevis
P17130
I
0.768
XM_855847.1
Canis familiaris
ENSCAFG00000006327
I
0.768
ENSCAFG00000006784
Canis familiaris
ENSCAFG00000006784
I
0.768
CBU92428
Xenopus laevis
CBU92428
I
0.768
AAA49742
Xenopus laevis
AAA49742
I
0.768
HNRNPA3
Gasterosteus aculeatus
ENSGACG00000004477
I
0.762
ENSRNOG00000011100
Rattus norvegicus
ENSRNOG00000011100
I
0.762
ENSMMUG00000007695
Macaca mulatta
ENSMMUG00000007695
I
0.762
ENSTBEG00000016272
Tupaia belangeri
ENSTBEG00000016272
I
0.762
HNRNPA3
Tetraodon nigroviridis
ENSTNIG00000016958
I
0.761
ENSCJAG00000032417
Callithrix jacchus
ENSCJAG00000032417
I
0.761
ENSCJAG00000004902
Callithrix jacchus
ENSCJAG00000004902
I
0.755
ENSCJAG00000009723
Callithrix jacchus
ENSCJAG00000009723
I
0.754
ENSCAFG00000011035
Canis familiaris
ENSCAFG00000011035
I
0.750
ENSOCUG00000022627
Oryctolagus cuniculus
ENSOCUG00000022627
I
0.748
ENSCJAG00000010169
Callithrix jacchus
ENSCJAG00000010169
I
0.748
XP_541811.1
Canis familiaris
ENSCAFG00000006586
I
0.748
Hnrnpa1
Dipodomys ordii
ENSDORG00000010628
I
0.746
ENSSARG00000008946
Sorex araneus
ENSSARG00000008946
I
0.746
ENSMLUG00000000788
Myotis lucifugus
ENSMLUG00000000788
I
0.743
LOC100397230
Callithrix jacchus
ENSCJAG00000014791
I
0.741
ENSTBEG00000012511
Tupaia belangeri
ENSTBEG00000012511
I
0.741
ENSPPYG00000001326
Pongo pygmaeus
ENSPPYG00000001326
I
0.740
hnrnpa1
Danio rerio
ENSDARG00000036675
I
0.739
ENSRNOG00000042377
Rattus norvegicus
ENSRNOG00000042377
I
0.737
ENSCAFG00000015319
Canis familiaris
ENSCAFG00000015319
I
0.736
ENSCJAG00000001353
Callithrix jacchus
ENSCJAG00000001353
I
0.736
ENSTTRG00000015563
Tursiops truncatus
ENSTTRG00000015563
I
0.735
ENSRNOG00000030250
Rattus norvegicus
ENSRNOG00000030250
I
0.735
ENSETEG00000015332
Echinops telfairi
ENSETEG00000015332
I
0.734
ENSCJAG00000035202
Callithrix jacchus
ENSCJAG00000035202
I
0.734
D4AD23_RAT
Rattus norvegicus
ENSRNOG00000025891
I
0.734
ENSCJAG00000000095
Callithrix jacchus
ENSCJAG00000000095
I
0.734
ENSMMUG00000031948
Macaca mulatta
ENSMMUG00000031948
I
0.734
D4A8U2_RAT
Rattus norvegicus
ENSRNOG00000007252
I
0.733
ENSSTOG00000015259
Spermophilus tridecemlineatus
ENSSTOG00000015259
I
0.732
ENSCAFG00000007879
Canis familiaris
ENSCAFG00000007879
I
0.731
ENSCAFG00000019118
Canis familiaris
ENSCAFG00000019118
I
0.731
ENSCAFG00000019104
Canis familiaris
ENSCAFG00000019104
I
0.729
LOC100054206
Equus caballus
ENSECAG00000006699
I
0.729
ENSCAFG00000004202
Canis familiaris
ENSCAFG00000004202
I
0.729
D3ZB98_RAT
Rattus norvegicus
ENSRNOG00000029641
I
0.728
ENSRNOG00000021280
Rattus norvegicus
ENSRNOG00000021280
I
0.727
ENSCAFG00000025274
Canis familiaris
ENSCAFG00000025274
I
0.727
ENSCJAG00000016375
Callithrix jacchus
ENSCJAG00000016375
I
0.727
ENSRNOG00000033211
Rattus norvegicus
ENSRNOG00000033211
I
0.727
ENSCJAG00000033784
Callithrix jacchus
ENSCJAG00000033784
I
0.725
ENSOCUG00000006431
Oryctolagus cuniculus
ENSOCUG00000006431
I
0.724
ENSCAFG00000017316
Canis familiaris
ENSCAFG00000017316
I
0.721
ENSGGOG00000025827
Gorilla gorilla
ENSGGOG00000025827
I
0.720
ENSCAFG00000002059
Canis familiaris
ENSCAFG00000002059
I
0.720
ENSCAFG00000005207
Canis familiaris
ENSCAFG00000005207
I
0.720
ENSCJAG00000001737
Callithrix jacchus
ENSCJAG00000001737
I
0.720
ENSCAFG00000014094
Canis familiaris
ENSCAFG00000014094
I
0.720
Ame_R018030
Ailuropoda melanoleuca
Ame_R018030
I
0.720
ENSRNOG00000024652
Rattus norvegicus
ENSRNOG00000024652
I
0.720
ENSRNOG00000043173
Rattus norvegicus
ENSRNOG00000043173
I
0.720
ENSMODG00000024570
Monodelphis domestica
ENSMODG00000024570
I
0.720
ENSCAFG00000005308
Canis familiaris
ENSCAFG00000005308
I
0.715
ENSCAFG00000020238
Canis familiaris
ENSCAFG00000020238
I
0.715
D4ACP9_RAT
Rattus norvegicus
ENSRNOG00000021929
I
0.715
XP_848548.1
Canis familiaris
ENSCAFG00000016313
I
0.713
ENSCJAG00000017130
Callithrix jacchus
ENSCJAG00000017130
I
0.713
ENSCJAG00000020672
Callithrix jacchus
ENSCJAG00000020672
I
0.713
ENSCJAG00000007250
Callithrix jacchus
ENSCJAG00000007250
I
0.713
ENSMMUG00000018397
Macaca mulatta
ENSMMUG00000018397
I
0.713
ENSCAFG00000023240
Canis familiaris
ENSCAFG00000023240
I
0.711
zgc:66127
Danio rerio
ENSDARG00000011020
I
0.711
D3ZB90_RAT
Rattus norvegicus
ENSRNOG00000038392
N
0.711
XM_001106745.1
Macaca mulatta
ENSMMUG00000031809
I
0.708
ENSMICG00000009289
Microcebus murinus
ENSMICG00000009289
I
0.708
ENSCAFG00000001973
Canis familiaris
ENSCAFG00000001973
I
0.708
D3ZK54_RAT
Rattus norvegicus
ENSRNOG00000025482
I
0.707
ENSEEUG00000000925
Erinaceus europaeus
ENSEEUG00000000925
I
0.707
ENSCAFG00000007198
Canis familiaris
ENSCAFG00000007198
I
0.707
ENSGGOG00000027879
Gorilla gorilla
ENSGGOG00000027879
I
0.706
ENSPCAG00000001867
Procavia capensis
ENSPCAG00000001867
I
0.704
ENSMODG00000023422
Monodelphis domestica
ENSMODG00000023422
I
0.701
ENSCAFG00000018186
Canis familiaris
ENSCAFG00000018186
I
0.701
ENSCAFG00000005164
Canis familiaris
ENSCAFG00000005164
I
0.701
ENSRNOG00000022655
Rattus norvegicus
ENSRNOG00000022655
N
0.701