Smptb (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000028033 T41189_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.724
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.724
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.724
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000014611 RRM 31 85
ENSRNOP00000014611 RRM 192 258
ENSRNOP00000014611 RRM 396 461
ENSRNOP00000014611 RRM 513 577

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

16 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.735
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.732
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.728
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.728
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.728
PTBP1 Homo sapiens ENSG00000011304 D 0.728
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.724
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.724
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.724
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.720
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.720
PTBP1 Equus caballus ENSECAG00000018845 I 0.716
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.712
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.712
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.704
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.700