PTBP1 (Meleagris gallopavo)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSMGAG00000003503 T38337_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.949
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.949
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.949
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000003355 RRM 61 117
ENSMGAP00000003355 RRM 186 252
ENSMGAP00000003355 RRM 364 430
ENSMGAP00000003355 RRM 481 545

Links

Other RRM family RBPs
Other Meleagris gallopavo RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 1.000
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.973
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.973
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.969
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.969
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.953
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.949
PTBP1 Homo sapiens ENSG00000011304 D 0.949
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.949
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.941
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.941
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.941
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.938
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.938
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.930
PTBP1 Equus caballus ENSECAG00000018845 I 0.926
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.926
AAH45068 Xenopus laevis AAH45068 I 0.918
AAF00041 Xenopus laevis AAF00041 I 0.899
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.898
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.883
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.879
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.879
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.856
ptbp1a Danio rerio ENSDARG00000019362 I 0.856
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.855
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.840
ptbp1b Danio rerio ENSDARG00000031907 I 0.836
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.831
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.825
AAH97557 Xenopus laevis AAH97557 I 0.825
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.824
ROD1 Danio rerio ENSDARG00000043757 I 0.816
ROD1 Sus scrofa ENSSSCG00000005466 I 0.812
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.812
ROD1 Equus caballus ENSECAG00000021243 I 0.812
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.805
ROD1 Bos taurus ENSBTAG00000016750 I 0.801
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.798
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.798
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.798
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.794
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.794
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.794
Rod1 Mus musculus ENSMUSG00000028382 I 0.794
ROD1 Homo sapiens ENSG00000119314 I 0.794
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.794
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.794
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.794
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.794
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.794
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.794
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.790
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.790
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.790
PTBP2 Homo sapiens ENSG00000117569 I 0.790
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.790
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.790
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.790
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.790
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.790
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.790
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.790
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.790
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.790
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.790
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.790
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.790
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.790
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.790
LOC100057336 Equus caballus ENSECAG00000015783 I 0.787
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.786
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.782
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.782
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.774
ROD1 Canis familiaris ENSCAFG00000003015 I 0.767
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.764
PTBP2 Danio rerio ENSDARG00000015901 I 0.759
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.758
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.757
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.746
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.743
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.743
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.740
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.738
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.718
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.712
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.712
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.708