PTBP1 (Tursiops truncatus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTTRG00000003439 T42557_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.953
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.953
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.953
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000003226 RRM 61 117
ENSTTRP00000003226 RRM 186 252
ENSTTRP00000003226 RRM 365 431
ENSTTRP00000003226 RRM 482 546

Links

Other RRM family RBPs
Other Tursiops truncatus RBPs

87 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.984
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.980
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.977
PTBP1 Equus caballus ENSECAG00000018845 I 0.969
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.957
PTBP1 Homo sapiens ENSG00000011304 D 0.953
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.953
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.953
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.949
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.945
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.945
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.938
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.938
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.922
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.922
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.922
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.918
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.918
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.918
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.902
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.891
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.883
AAH45068 Xenopus laevis AAH45068 I 0.875
AAF00041 Xenopus laevis AAF00041 I 0.872
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.844
ptbp1a Danio rerio ENSDARG00000019362 I 0.829
ptbp1b Danio rerio ENSDARG00000031907 I 0.820
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.817
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.809
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.805
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.805
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.804
AAH97557 Xenopus laevis AAH97557 I 0.802
ROD1 Equus caballus ENSECAG00000021243 I 0.797
ROD1 Sus scrofa ENSSSCG00000005466 I 0.797
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.790
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.790
ROD1 Danio rerio ENSDARG00000043757 I 0.789
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.787
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.786
Rod1 Mus musculus ENSMUSG00000028382 I 0.786
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.786
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.786
ROD1 Bos taurus ENSBTAG00000016750 I 0.785
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.782
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.782
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.782
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.778
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.778
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.778
ROD1 Homo sapiens ENSG00000119314 I 0.778
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.778
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.774
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.774
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.774
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.774
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.770
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.770
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.770
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.770
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.770
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.770
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.770
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.770
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.770
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.770
PTBP2 Homo sapiens ENSG00000117569 I 0.770
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.770
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.770
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.770
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.770
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.770
LOC100057336 Equus caballus ENSECAG00000015783 I 0.767
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.767
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.767
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.759
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.754
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.753
ROD1 Canis familiaris ENSCAFG00000003015 I 0.751
PTBP2 Danio rerio ENSDARG00000015901 I 0.751
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.738
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.734
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.732
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.729
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.728
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.724
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.706