CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP1
(
Equus caballus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSECAG00000018845
T36671_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.949
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.949
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.949
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSECAP00000016972
RRM
61
117
IHIRKLPNDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSV
ENSECAP00000016972
RRM
186
252
IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLLLDAQNIYNARCT
ENSECAP00000016972
RRM
363
429
LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVR
ENSECAP00000016972
RRM
480
544
LHLSNIPPSISEDDLKILFSSNGGIVMGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENH
Links
Other
RRM
family RBPs
Other
Equus caballus
RBPs
87 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Pteropus vampyrus
ENSPVAG00000008288
I
0.977
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.973
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.973
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.969
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.949
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.949
PTBP1
Homo sapiens
ENSG00000011304
D
0.949
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.945
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.941
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.941
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.938
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.926
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.926
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.914
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.914
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.914
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.911
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.910
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.910
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.906
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.887
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.879
AAF00041
Xenopus laevis
AAF00041
I
0.868
AAH45068
Xenopus laevis
AAH45068
I
0.868
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.844
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.825
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.813
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.812
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.805
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.800
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.798
AAH97557
Xenopus laevis
AAH97557
I
0.798
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.793
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.790
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.789
ROD1
Equus caballus
ENSECAG00000021243
I
0.789
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.786
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.786
Rod1
Mus musculus
ENSMUSG00000028382
I
0.786
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.786
ROD1
Danio rerio
ENSDARG00000043757
I
0.785
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.782
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.782
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.782
ENSRNOG00000027820
Rattus norvegicus
ENSRNOG00000027820
I
0.779
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.778
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.778
ROD1
Homo sapiens
ENSG00000119314
I
0.778
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.778
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.778
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.778
ROD1
Bos taurus
ENSBTAG00000016750
I
0.777
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.774
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.774
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.774
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.770
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.770
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.770
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.770
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.770
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.770
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.770
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.770
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.770
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.770
PTBP2
Homo sapiens
ENSG00000117569
I
0.770
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.770
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.770
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.770
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.770
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.770
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.767
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.767
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.767
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.763
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.759
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.749
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.747
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.746
PTBP2
Danio rerio
ENSDARG00000015901
I
0.743
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.731
PTBP2
Oryzias latipes
ENSORLG00000019191
I
0.728
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.727
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.720
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.717
Smptb
Rattus norvegicus
ENSRNOG00000028033
I
0.716
PTBP2
Microcebus murinus
ENSMICG00000008543
I
0.700