PTBP1 (Taeniopygia guttata)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTGUG00000000641 T41834_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.938
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.938
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.938
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTGUP00000000660 RRM 24 80
ENSTGUP00000000660 RRM 149 215
ENSTGUP00000000660 RRM 326 392
ENSTGUP00000000660 RRM 443 507

Links

Other RRM family RBPs
Other Taeniopygia guttata RBPs

89 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.973
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.973
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.953
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.945
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.945
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.938
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.938
PTBP1 Homo sapiens ENSG00000011304 D 0.938
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.938
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.934
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.930
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.922
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.922
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.922
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.918
Ptbp1 Rattus norvegicus ENSRNOG00000010448 I 0.914
PTBP1 Equus caballus ENSECAG00000018845 I 0.906
AAH45068 Xenopus laevis AAH45068 I 0.903
AAF00041 Xenopus laevis AAF00041 I 0.887
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.887
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.867
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.867
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.867
ptbp1a Danio rerio ENSDARG00000019362 I 0.852
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.844
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.840
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.833
ptbp1b Danio rerio ENSDARG00000031907 I 0.828
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.823
AAH97557 Xenopus laevis AAH97557 I 0.817
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.817
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.809
ROD1 Sus scrofa ENSSSCG00000005466 I 0.805
ROD1 Danio rerio ENSDARG00000043757 I 0.805
ROD1 Equus caballus ENSECAG00000021243 I 0.805
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.798
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.797
ROD1 Bos taurus ENSBTAG00000016750 I 0.793
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.790
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.790
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.786
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.786
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.786
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.786
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.786
Rod1 Mus musculus ENSMUSG00000028382 I 0.786
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.786
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.786
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.786
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.786
ROD1 Homo sapiens ENSG00000119314 I 0.786
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.786
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.782
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.782
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.782
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.782
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.782
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.782
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.782
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.782
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.782
PTBP2 Homo sapiens ENSG00000117569 I 0.782
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.782
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.782
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.782
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.782
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.782
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.782
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.782
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.782
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.782
LOC100057336 Equus caballus ENSECAG00000015783 I 0.779
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.774
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.774
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.767
ROD1 Canis familiaris ENSCAFG00000003015 I 0.763
PTBP2 Danio rerio ENSDARG00000015901 I 0.762
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.761
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.758
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.756
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.747
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.746
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.732
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.729
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.727
PTBP2 Gasterosteus aculeatus ENSGACG00000000940 I 0.721
PTBP2 Microcebus murinus ENSMICG00000008543 I 0.708
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.704
PTBP2 Spermophilus tridecemlineatus ENSSTOG00000011727 I 0.700