CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PTBP1
(
Pteropus vampyrus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
ENSPVAG00000008288
T40905_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
PTBP1
M227_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00268
0.961
PTBP1
M303_0.6
Homo sapiens
Sequence logo not available
UCUU
SELEX
Cook et al.(2011)
46_9214659
0.961
PTBP1
M228_0.6
Homo sapiens
HYUUUYU
RNAcompete
Ray et al.(2013)
RNCMPT00269
0.961
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPVAP00000007829
RRM
61
117
IHIRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKSQAFIEMNTEEAANTMVNYYTSV
ENSPVAP00000007829
RRM
186
252
IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYAEPVSAQHAKLSLDGQNIYNACCT
ENSPVAP00000007829
RRM
365
431
LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNGHKLHGKPVR
ENSPVAP00000007829
RRM
482
546
LHLSNIPPSISEDDLKILFSSNGGIVKGFKFFQKDRKMALIQMGSVEEAIQALIDLHNHDLGENH
Links
Other
RRM
family RBPs
Other
Pteropus vampyrus
RBPs
88 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTBP1
Sus scrofa
ENSSSCG00000013421
I
0.988
PTBP1
Canis familiaris
ENSCAFG00000019693
I
0.984
PTBP1
Tursiops truncatus
ENSTTRG00000003439
I
0.984
PTBP1
Equus caballus
ENSECAG00000018845
I
0.977
PTBP1
Homo sapiens
ENSG00000011304
D
0.961
XR_025154.1
Pan troglodytes
ENSPTRG00000010165
I
0.961
ENSPPYG00000009289
Pongo pygmaeus
ENSPPYG00000009289
I
0.961
PTBP1
Cavia porcellus
ENSCPOG00000025512
I
0.957
Ptbp1
Mus musculus
ENSMUSG00000006498
I
0.957
Ptbp1
Rattus norvegicus
ENSRNOG00000010448
I
0.953
PTBP1
Callithrix jacchus
ENSCJAG00000020162
I
0.953
Q5F456_CHICK
Gallus gallus
ENSGALG00000001962
I
0.941
PTBP1
Meleagris gallopavo
ENSMGAG00000003503
I
0.941
ENSMLUG00000003320
Myotis lucifugus
ENSMLUG00000003320
I
0.930
PTBP1
Ornithorhynchus anatinus
ENSOANG00000009191
I
0.926
PTBP1
Macropus eugenii
ENSMEUG00000006710
I
0.926
PTBP1
Loxodonta africana
ENSLAFG00000027110
I
0.926
PTBP1
Monodelphis domestica
ENSMODG00000006302
I
0.926
PTBP1
Taeniopygia guttata
ENSTGUG00000000641
I
0.922
PTBP1
Macaca mulatta
ENSMMUG00000016450
I
0.910
Ptbp1
Dipodomys ordii
ENSDORG00000002835
I
0.898
ENSETEG00000006890
Echinops telfairi
ENSETEG00000006890
I
0.891
AAF00041
Xenopus laevis
AAF00041
I
0.879
AAH45068
Xenopus laevis
AAH45068
I
0.879
PTBP1
Procavia capensis
ENSPCAG00000007614
I
0.852
ptbp1a
Danio rerio
ENSDARG00000019362
I
0.833
ptbp1
Xenopus tropicalis
ENSXETG00000021661
I
0.825
ptbp1b
Danio rerio
ENSDARG00000031907
I
0.816
PTBP1
Gasterosteus aculeatus
ENSGACG00000011048
I
0.813
AAH97557
Xenopus laevis
AAH97557
I
0.809
ROD1
Sus scrofa
ENSSSCG00000005466
I
0.809
ROD1
Equus caballus
ENSECAG00000021243
I
0.809
PTBP1
Oryzias latipes
ENSORLG00000011430
I
0.808
PTBP1
Takifugu rubripes
ENSTRUG00000011360
I
0.805
PTBP1
Oryzias latipes
ENSORLG00000014019
I
0.805
Rod1
Mus musculus
ENSMUSG00000028382
I
0.802
Rod1
Rattus norvegicus
ENSRNOG00000016334
I
0.802
rod1
Xenopus tropicalis
ENSXETG00000002225
I
0.802
ROD1
Monodelphis domestica
ENSMODG00000005502
I
0.798
ROD1
Cavia porcellus
ENSCPOG00000011586
I
0.798
ROD1
Anolis carolinensis
ENSACAG00000017316
I
0.798
ROD1
Oryctolagus cuniculus
ENSOCUG00000017670
I
0.798
ROD1
Bos taurus
ENSBTAG00000016750
I
0.797
ROD1
Pan troglodytes
ENSPTRG00000021263
I
0.794
ENSPPYG00000019504
Pongo pygmaeus
ENSPPYG00000019504
I
0.794
ROD1
Macaca mulatta
ENSMMUG00000000464
I
0.794
ROD1
Gorilla gorilla
ENSGGOG00000001755
I
0.794
ROD1
Homo sapiens
ENSG00000119314
I
0.794
ROD1
Danio rerio
ENSDARG00000043757
I
0.793
PTBP2
Anolis carolinensis
ENSACAG00000005600
I
0.790
ROD1
Loxodonta africana
ENSLAFG00000011358
I
0.790
ENSRNOG00000027820
Rattus norvegicus
ENSRNOG00000027820
I
0.787
PTBP2
Loxodonta africana
ENSLAFG00000017343
I
0.782
PTBP2
Meleagris gallopavo
ENSMGAG00000007308
I
0.782
PTBP1
Takifugu rubripes
ENSTRUG00000010168
I
0.782
Q9YI60_CHICK
Gallus gallus
ENSGALG00000005552
I
0.782
PTBP2
Tursiops truncatus
ENSTTRG00000012904
I
0.778
PTBP2
Cavia porcellus
ENSCPOG00000003762
I
0.778
PTBP2
Macaca mulatta
ENSMMUG00000016130
I
0.778
PTBP2
Vicugna pacos
ENSVPAG00000002841
I
0.778
Ptbp2
Mus musculus
ENSMUSG00000028134
I
0.778
Ame_R002925
Ailuropoda melanoleuca
Ame_R002925
I
0.778
PTBP2
Oryctolagus cuniculus
ENSOCUG00000017608
I
0.778
PTBP2
Canis familiaris
ENSCAFG00000020080
I
0.778
PTBP2
Gorilla gorilla
ENSGGOG00000000659
I
0.778
PTBP2
Homo sapiens
ENSG00000117569
I
0.778
Ptbp2
Rattus norvegicus
ENSRNOG00000010827
I
0.778
ROD1
Callithrix jacchus
ENSCJAG00000017686
I
0.778
PTBP2
Tarsius syrichta
ENSTSYG00000002576
I
0.778
ENSPPYG00000001132
Pongo pygmaeus
ENSPPYG00000001132
I
0.778
PTBP2
Ornithorhynchus anatinus
ENSOANG00000004656
I
0.778
PTBP2
Pan troglodytes
ENSPTRG00000000987
I
0.778
LOC100057336
Equus caballus
ENSECAG00000015783
I
0.775
PTBP2
Monodelphis domestica
ENSMODG00000004211
I
0.774
PTBP2
Taeniopygia guttata
ENSTGUG00000005558
I
0.770
ROD1
Canis familiaris
ENSCAFG00000003015
I
0.767
PTBP2
Myotis lucifugus
ENSMLUG00000002522
I
0.767
PTBP2
Oryzias latipes
ENSORLG00000013557
I
0.754
PTBP2
Tetraodon nigroviridis
ENSTNIG00000018950
I
0.753
PTBP2
Danio rerio
ENSDARG00000015901
I
0.751
PTBP2
Gasterosteus aculeatus
ENSGACG00000014892
I
0.738
PTBP2
Oryzias latipes
ENSORLG00000019191
I
0.736
ROD1
Takifugu rubripes
ENSTRUG00000007042
I
0.732
ROD1
Tetraodon nigroviridis
ENSTNIG00000002790
I
0.729
Smptb
Rattus norvegicus
ENSRNOG00000028033
I
0.728
PTBP1
Gasterosteus aculeatus
ENSGACG00000013587
I
0.727
PTBP2
Gasterosteus aculeatus
ENSGACG00000000940
I
0.702
PTBP2
Microcebus murinus
ENSMICG00000008543
I
0.700