Ptbp1 (Rattus norvegicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSRNOG00000010448 T41071_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PTBP1
M303_0.6 		Homo sapiens Sequence logo not available UCUU SELEX
Cook et al.(2011)
46_9214659 		0.957
PTBP1
M228_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00269 		0.957
PTBP1
M227_0.6 		Homo sapiens HYUUUYU RNAcompete
Ray et al.(2013)
RNCMPT00268 		0.957
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000029540 RRM 60 115
ENSRNOP00000029540 RRM 185 251
ENSRNOP00000029540 RRM 364 430
ENSRNOP00000029540 RRM 481 545
ENSRNOP00000029838 RRM 60 115
ENSRNOP00000029838 RRM 185 251
ENSRNOP00000029838 RRM 338 388
ENSRNOP00000029838 RRM 453 517
ENSRNOP00000043256 RRM 60 115
ENSRNOP00000043256 RRM 185 251
ENSRNOP00000043256 RRM 362 428
ENSRNOP00000043256 RRM 479 543
ENSRNOP00000048322 RRM 60 115
ENSRNOP00000048322 RRM 185 251
ENSRNOP00000048322 RRM 338 404
ENSRNOP00000048322 RRM 455 519
ENSRNOP00000051199 RRM 44 80
ENSRNOP00000051199 RRM 150 216
ENSRNOP00000051199 RRM 303 369
ENSRNOP00000051199 RRM 420 484

Links

Other RRM family RBPs
Other Rattus norvegicus RBPs

88 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Ptbp1 Mus musculus ENSMUSG00000006498 I 0.996
PTBP1 Cavia porcellus ENSCPOG00000025512 I 0.965
PTBP1 Canis familiaris ENSCAFG00000019693 I 0.961
PTBP1 Homo sapiens ENSG00000011304 D 0.957
PTBP1 Sus scrofa ENSSSCG00000013421 I 0.957
XR_025154.1 Pan troglodytes ENSPTRG00000010165 I 0.957
ENSPPYG00000009289 Pongo pygmaeus ENSPPYG00000009289 I 0.957
PTBP1 Pteropus vampyrus ENSPVAG00000008288 I 0.953
PTBP1 Callithrix jacchus ENSCJAG00000020162 I 0.949
PTBP1 Tursiops truncatus ENSTTRG00000003439 I 0.945
PTBP1 Equus caballus ENSECAG00000018845 I 0.938
Q5F456_CHICK Gallus gallus ENSGALG00000001962 I 0.926
PTBP1 Meleagris gallopavo ENSMGAG00000003503 I 0.926
PTBP1 Taeniopygia guttata ENSTGUG00000000641 I 0.914
PTBP1 Monodelphis domestica ENSMODG00000006302 I 0.914
PTBP1 Macropus eugenii ENSMEUG00000006710 I 0.914
PTBP1 Ornithorhynchus anatinus ENSOANG00000009191 I 0.907
PTBP1 Macaca mulatta ENSMMUG00000016450 I 0.906
ENSMLUG00000003320 Myotis lucifugus ENSMLUG00000003320 I 0.906
PTBP1 Loxodonta africana ENSLAFG00000027110 I 0.902
Ptbp1 Dipodomys ordii ENSDORG00000002835 I 0.898
AAF00041 Xenopus laevis AAF00041 I 0.895
AAH45068 Xenopus laevis AAH45068 I 0.879
ENSETEG00000006890 Echinops telfairi ENSETEG00000006890 I 0.878
PTBP1 Procavia capensis ENSPCAG00000007614 I 0.863
ptbp1a Danio rerio ENSDARG00000019362 I 0.840
ptbp1 Xenopus tropicalis ENSXETG00000021661 I 0.833
PTBP1 Gasterosteus aculeatus ENSGACG00000011048 I 0.825
AAH97557 Xenopus laevis AAH97557 I 0.824
PTBP1 Oryzias latipes ENSORLG00000011430 I 0.819
ENSRNOG00000027820 Rattus norvegicus ENSRNOG00000027820 I 0.818
ptbp1b Danio rerio ENSDARG00000031907 I 0.816
ROD1 Equus caballus ENSECAG00000021243 I 0.816
ROD1 Sus scrofa ENSSSCG00000005466 I 0.816
PTBP1 Takifugu rubripes ENSTRUG00000011360 I 0.809
Rod1 Mus musculus ENSMUSG00000028382 I 0.809
Rod1 Rattus norvegicus ENSRNOG00000016334 I 0.809
ROD1 Danio rerio ENSDARG00000043757 I 0.808
ROD1 Oryctolagus cuniculus ENSOCUG00000017670 I 0.805
ROD1 Monodelphis domestica ENSMODG00000005502 I 0.805
rod1 Xenopus tropicalis ENSXETG00000002225 I 0.805
ROD1 Cavia porcellus ENSCPOG00000011586 I 0.805
ROD1 Bos taurus ENSBTAG00000016750 I 0.804
ENSPPYG00000019504 Pongo pygmaeus ENSPPYG00000019504 I 0.801
ROD1 Macaca mulatta ENSMMUG00000000464 I 0.801
ROD1 Homo sapiens ENSG00000119314 I 0.801
ROD1 Gorilla gorilla ENSGGOG00000001755 I 0.801
ROD1 Pan troglodytes ENSPTRG00000021263 I 0.801
ROD1 Anolis carolinensis ENSACAG00000017316 I 0.801
ROD1 Loxodonta africana ENSLAFG00000011358 I 0.797
PTBP1 Oryzias latipes ENSORLG00000014019 I 0.793
ROD1 Callithrix jacchus ENSCJAG00000017686 I 0.789
PTBP1 Takifugu rubripes ENSTRUG00000010168 I 0.785
PTBP2 Anolis carolinensis ENSACAG00000005600 I 0.782
PTBP2 Meleagris gallopavo ENSMGAG00000007308 I 0.774
PTBP2 Loxodonta africana ENSLAFG00000017343 I 0.774
Q9YI60_CHICK Gallus gallus ENSGALG00000005552 I 0.774
PTBP2 Myotis lucifugus ENSMLUG00000002522 I 0.773
PTBP2 Oryctolagus cuniculus ENSOCUG00000017608 I 0.770
PTBP2 Vicugna pacos ENSVPAG00000002841 I 0.770
PTBP2 Gorilla gorilla ENSGGOG00000000659 I 0.770
PTBP2 Tursiops truncatus ENSTTRG00000012904 I 0.770
ENSPPYG00000001132 Pongo pygmaeus ENSPPYG00000001132 I 0.770
PTBP2 Cavia porcellus ENSCPOG00000003762 I 0.770
Ptbp2 Rattus norvegicus ENSRNOG00000010827 I 0.770
PTBP2 Canis familiaris ENSCAFG00000020080 I 0.770
PTBP2 Pan troglodytes ENSPTRG00000000987 I 0.770
Ptbp2 Mus musculus ENSMUSG00000028134 I 0.770
Ame_R002925 Ailuropoda melanoleuca Ame_R002925 I 0.770
PTBP2 Ornithorhynchus anatinus ENSOANG00000004656 I 0.770
PTBP2 Macaca mulatta ENSMMUG00000016130 I 0.770
PTBP2 Homo sapiens ENSG00000117569 I 0.770
PTBP2 Tarsius syrichta ENSTSYG00000002576 I 0.770
ROD1 Canis familiaris ENSCAFG00000003015 I 0.770
LOC100057336 Equus caballus ENSECAG00000015783 I 0.767
PTBP2 Monodelphis domestica ENSMODG00000004211 I 0.767
PTBP2 Taeniopygia guttata ENSTGUG00000005558 I 0.763
PTBP2 Oryzias latipes ENSORLG00000013557 I 0.750
PTBP2 Danio rerio ENSDARG00000015901 I 0.747
PTBP2 Tetraodon nigroviridis ENSTNIG00000018950 I 0.745
PTBP2 Gasterosteus aculeatus ENSGACG00000014892 I 0.742
ROD1 Takifugu rubripes ENSTRUG00000007042 I 0.736
ROD1 Tetraodon nigroviridis ENSTNIG00000002790 I 0.733
PTBP2 Oryzias latipes ENSORLG00000019191 I 0.728
Smptb Rattus norvegicus ENSRNOG00000028033 I 0.724
PTBP1 Gasterosteus aculeatus ENSGACG00000013587 I 0.723
PTBP1 Echinops telfairi ENSETEG00000018078 N 0.720