ELAVL1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000004733 T42029_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.708
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.708
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.708
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.708
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.708
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.708
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000007386 RRM 19 62
ENSTNIP00000007386 RRM 107 175
ENSTNIP00000007386 RRM 242 312

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.839
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.796
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.790
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.773
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.754
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.712
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.712
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.712
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.712
Elavl1 Mus musculus ENSMUSG00000040028 I 0.712
elavl1 Danio rerio ENSDARG00000038695 I 0.711
hug Danio rerio ENSDARG00000016405 I 0.711
ELAVL2 Macropus eugenii ENSMEUG00000006499 I 0.708
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.708
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.708
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.708
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.708
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.708
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.708
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.708
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.708
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.708
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.708
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.708
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.708
LOC100060819 Equus caballus ENSECAG00000019459 I 0.708
ELAVL1 Felis catus ENSFCAG00000014947 I 0.708
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.708
ELAVL1 Homo sapiens ENSG00000066044 D 0.708
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.703
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.703
AAH86269 Xenopus laevis AAH86269 I 0.703
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.703
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.703
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.703
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.703
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.703
Q5U259 Xenopus laevis Q5U259 I 0.703
ELAVL4 Spermophilus tridecemlineatus ENSSTOG00000002834 I 0.703