ELAVL1 (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000007296 T42258_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.830
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.830
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.830
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.830
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.830
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.830
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.732
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.732
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.732
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.728
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.728
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.728
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000017981 RRM 7 77
ENSTRUP00000017981 RRM 93 161
ENSTRUP00000017981 RRM 243 313

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

150 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.915
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.886
hug Danio rerio ENSDARG00000016405 I 0.848
elavl1 Danio rerio ENSDARG00000038695 I 0.844
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.839
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.835
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.835
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.830
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.830
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.830
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.830
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.830
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.830
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.830
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.830
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.830
ELAVL1 Homo sapiens ENSG00000066044 D 0.830
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.830
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.830
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.830
Elavl1 Mus musculus ENSMUSG00000040028 I 0.830
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.830
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.830
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.830
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.830
ELAVL1 Felis catus ENSFCAG00000014947 I 0.830
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.825
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.825
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.825
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.825
LOC100060819 Equus caballus ENSECAG00000019459 I 0.825
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.825
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.825
AAH86269 Xenopus laevis AAH86269 I 0.825
Q5U259 Xenopus laevis Q5U259 I 0.825
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.825
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.821
AAA96942 Xenopus laevis AAA96942 I 0.821
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.818
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.816
Q1JQ73 Xenopus laevis Q1JQ73 I 0.784
AAI16460 Xenopus laevis AAI16460 I 0.784
elavl3 Danio rerio ENSDARG00000014420 I 0.744
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.744
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.744
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.742
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.741
AAA96943 Xenopus laevis AAA96943 I 0.737
AAH94189 Xenopus laevis AAH94189 I 0.737
AAI70539 Xenopus laevis AAI70539 I 0.737
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.737
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.737
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.737
Q91903 Xenopus laevis Q91903 I 0.737
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.736
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.735
ELAVL3 Homo sapiens ENSG00000196361 I 0.735
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.735
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.735
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.735
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.735
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.735
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.735
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.735
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.735
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.735
Elavl3 Mus musculus ENSMUSG00000003410 I 0.735
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.734
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.732
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.732
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.732
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.732
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.732
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.732
Elavl2 Mus musculus ENSMUSG00000008489 I 0.732
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.732
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.732
CBF67567 Xenopus laevis CBF67567 I 0.732
CAA59430 Xenopus laevis CAA59430 I 0.732
CBU92440 Xenopus laevis CBU92440 I 0.732
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.732
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.732
AAH99348 Xenopus laevis AAH99348 I 0.732
AAA96945 Xenopus laevis AAA96945 I 0.732
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.732
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.732
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.732
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.732
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.732
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.732
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.732
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.732
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.732
ELAVL2 Homo sapiens ENSG00000107105 D 0.732
ELAVL2 Equus caballus ENSECAG00000020142 I 0.732
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.732
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.732
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.728
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.728
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.728
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.728
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.728
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.728
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.728
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.728
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.728
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.728
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.728
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.728
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.728
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.728
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.728
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.728
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.728
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.728
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.728
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.728
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.728
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.728
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.728
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.728
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.728
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.728
ELAVL4 Homo sapiens ENSG00000162374 D 0.728
LOC100051268 Equus caballus ENSECAG00000022284 I 0.728
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.728
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.728
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.728
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.728
Elavl4 Mus musculus ENSMUSG00000028546 I 0.728
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.728
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.728
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.728
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.728
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.728
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.728
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.728
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.726
elavl4 Danio rerio ENSDARG00000045639 I 0.726
AAI69769 Xenopus laevis AAI69769 I 0.722
AAA96944 Xenopus laevis AAA96944 I 0.722
Q91584 Xenopus laevis Q91584 I 0.722
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.722
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.720
elavl2 Danio rerio ENSDARG00000040732 I 0.718
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.718
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.711
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.711
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.706
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.703