ELAVL1 (Tetraodon nigroviridis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTNIG00000019823 T42185_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.873
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.873
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.873
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.873
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.873
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.873
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.770
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.770
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.770
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.761
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.761
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.761
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000023090 RRM 21 92
ENSTNIP00000023090 RRM 108 174
ENSTNIP00000023090 RRM 246 316

Links

Other RRM family RBPs
Other Tetraodon nigroviridis RBPs

161 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.943
elavl1 Danio rerio ENSDARG00000038695 I 0.887
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.884
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.882
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.882
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.882
Elavl1 Mus musculus ENSMUSG00000040028 I 0.882
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.882
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.882
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.878
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.873
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.873
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.873
ELAVL1 Homo sapiens ENSG00000066044 D 0.873
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.873
ELAVL1 Felis catus ENSFCAG00000014947 I 0.873
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.873
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.873
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.873
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.873
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.873
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.873
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.873
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.873
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.873
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.873
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.868
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.868
LOC100060819 Equus caballus ENSECAG00000019459 I 0.868
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.868
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.863
hug Danio rerio ENSDARG00000016405 I 0.863
Q5U259 Xenopus laevis Q5U259 I 0.863
AAH86269 Xenopus laevis AAH86269 I 0.863
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.858
AAA96942 Xenopus laevis AAA96942 I 0.858
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.835
AAI16460 Xenopus laevis AAI16460 I 0.820
Q1JQ73 Xenopus laevis Q1JQ73 I 0.820
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.816
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.816
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.775
Q91903 Xenopus laevis Q91903 I 0.775
AAI70539 Xenopus laevis AAI70539 I 0.775
AAA96943 Xenopus laevis AAA96943 I 0.775
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.775
AAH94189 Xenopus laevis AAH94189 I 0.775
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.774
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.774
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.774
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.770
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.770
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.770
CAA59430 Xenopus laevis CAA59430 I 0.770
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.770
Elavl2 Mus musculus ENSMUSG00000008489 I 0.770
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.770
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.770
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.770
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.770
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.770
ELAVL2 Homo sapiens ENSG00000107105 D 0.770
ELAVL2 Equus caballus ENSECAG00000020142 I 0.770
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.770
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.770
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.770
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.770
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.770
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.770
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.770
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.770
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.770
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.770
elavl2 Danio rerio ENSDARG00000040732 I 0.765
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.765
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.765
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.765
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.761
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.761
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.761
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.761
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.761
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.761
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.761
Elavl4 Mus musculus ENSMUSG00000028546 I 0.761
AAA96945 Xenopus laevis AAA96945 I 0.761
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.761
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.761
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.761
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.761
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.761
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.761
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.761
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.761
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.761
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.761
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.761
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.761
LOC100051268 Equus caballus ENSECAG00000022284 I 0.761
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.761
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.761
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.761
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.761
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.761
CBF67567 Xenopus laevis CBF67567 I 0.761
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.761
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.761
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.761
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.761
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.761
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.761
CBU92440 Xenopus laevis CBU92440 I 0.761
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.761
AAH99348 Xenopus laevis AAH99348 I 0.761
ELAVL4 Homo sapiens ENSG00000162374 D 0.761
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.759
elavl3 Danio rerio ENSDARG00000014420 I 0.759
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.759
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.756
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.756
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.756
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.756
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.756
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.755
elavl4 Danio rerio ENSDARG00000045639 I 0.753
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.752
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.751
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.751
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.749
Q91584 Xenopus laevis Q91584 I 0.746
AAA96944 Xenopus laevis AAA96944 I 0.746
AAI69769 Xenopus laevis AAI69769 I 0.746
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.743
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.741
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.741
Elavl3 Mus musculus ENSMUSG00000003410 I 0.741
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.741
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.741
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.741
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.741
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.741
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.741
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.741
ELAVL3 Homo sapiens ENSG00000196361 I 0.741
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.741
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.736
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.736
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.731
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.731
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.726
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.722
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.717
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.717
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.712
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.712
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.708
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.708
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.708
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.703
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.703
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.703