ELAVL1 (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000012435 T40200_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.887
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.887
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.887
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.887
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.887
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.887
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.811
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.811
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.811
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.788
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.788
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.788
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000015569 RRM 38 108
ENSORLP00000015569 RRM 124 195
ENSORLP00000015572 RRM 22 92
ENSORLP00000015572 RRM 108 176
ENSORLP00000015572 RRM 246 316

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

164 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.930
elavl1 Danio rerio ENSDARG00000038695 I 0.910
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.892
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.887
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.887
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.887
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.887
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.887
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.887
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.887
ELAVL1 Felis catus ENSFCAG00000014947 I 0.887
ELAVL1 Homo sapiens ENSG00000066044 D 0.887
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.887
Elavl1 Mus musculus ENSMUSG00000040028 I 0.887
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.887
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.887
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.887
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.887
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.887
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.887
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.887
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.883
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.883
AAH86269 Xenopus laevis AAH86269 I 0.883
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.883
LOC100060819 Equus caballus ENSECAG00000019459 I 0.883
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.883
Q5U259 Xenopus laevis Q5U259 I 0.883
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.878
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.878
AAA96942 Xenopus laevis AAA96942 I 0.878
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.878
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.873
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.873
hug Danio rerio ENSDARG00000016405 I 0.873
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.869
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.858
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.849
AAI16460 Xenopus laevis AAI16460 I 0.839
Q1JQ73 Xenopus laevis Q1JQ73 I 0.839
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.835
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.811
AAA96943 Xenopus laevis AAA96943 I 0.811
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.811
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.811
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.811
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.811
ELAVL2 Homo sapiens ENSG00000107105 D 0.811
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.811
AAI70539 Xenopus laevis AAI70539 I 0.811
AAH94189 Xenopus laevis AAH94189 I 0.811
Q91903 Xenopus laevis Q91903 I 0.811
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.811
ELAVL2 Equus caballus ENSECAG00000020142 I 0.811
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.811
Elavl2 Mus musculus ENSMUSG00000008489 I 0.811
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.811
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.811
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.811
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.811
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.811
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.811
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.811
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.811
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.811
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.811
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.811
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.811
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.811
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.811
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.807
CAA59430 Xenopus laevis CAA59430 I 0.807
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.797
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.797
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.797
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.792
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.789
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.788
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.788
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.788
LOC100051268 Equus caballus ENSECAG00000022284 I 0.788
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.788
Elavl4 Mus musculus ENSMUSG00000028546 I 0.788
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.788
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.788
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.788
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.788
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.788
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.788
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.788
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.788
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.788
elavl2 Danio rerio ENSDARG00000040732 I 0.788
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.788
ELAVL4 Homo sapiens ENSG00000162374 D 0.788
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.788
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.788
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.788
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.788
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.788
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.788
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.788
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.788
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.788
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.788
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.788
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.788
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.788
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.788
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.788
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.788
CBF67567 Xenopus laevis CBF67567 I 0.783
AAA96945 Xenopus laevis AAA96945 I 0.783
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.783
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.783
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.783
CBU92440 Xenopus laevis CBU92440 I 0.783
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.783
AAH99348 Xenopus laevis AAH99348 I 0.783
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.783
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.783
elavl4 Danio rerio ENSDARG00000045639 I 0.772
elavl3 Danio rerio ENSDARG00000014420 I 0.764
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.764
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.764
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.764
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.759
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.757
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.757
Q91584 Xenopus laevis Q91584 I 0.755
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.755
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.755
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.755
AAI69769 Xenopus laevis AAI69769 I 0.755
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.755
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.755
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.755
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.755
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.755
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.755
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.755
AAA96944 Xenopus laevis AAA96944 I 0.755
ELAVL3 Homo sapiens ENSG00000196361 I 0.755
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.751
Elavl3 Mus musculus ENSMUSG00000003410 I 0.750
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.750
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.750
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.748
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.746
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.737
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.736
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.731
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.731
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.731
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.731
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.731
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.726
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.724
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.722
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.718
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.714
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.714
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.703
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.701