hug (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSDARG00000016405 T36081_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
ELAVL1
M327_0.6 		Homo sapiens Sequence logo not available KKNWWDNNNUKNNUUNUNNH RIP-chip
Cook et al.(2011)
714_14981256 		0.873
ELAVL1
M232_0.6 		Homo sapiens UUUUUUK RNAcompete
Ray et al.(2013)
RNCMPT00274 		0.873
ELAVL1
M127_0.6 		Homo sapiens UUKRUUU RNAcompete
Ray et al.(2013)
RNCMPT00136 		0.873
ELAVL1
M112_0.6 		Homo sapiens UUURKUU RNAcompete
Ray et al.(2013)
RNCMPT00117 		0.873
ELAVL1
M108_0.6 		Homo sapiens UUWGUUU RNAcompete
Ray et al.(2013)
RNCMPT00112 		0.873
ELAVL1
M031_0.6 		Homo sapiens UUDUUUU RNAcompete
Ray et al.(2013)
RNCMPT00032 		0.873
ELAVL2
M329_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
783_7972035 		0.808
ELAVL2
M328_0.6 		Homo sapiens MUYCUUUWUWUUY SELEX
Cook et al.(2011)
782_8497264 		0.808
ELAVL2
M330_0.6 		Homo sapiens RWUUUAUUUWR SELEX
Cook et al.(2011)
784_7972035 		0.808
ELAVL4
M315_0.6 		Homo sapiens Sequence logo not available UUUUUUUUUWAAA RIP-chip
Cook et al.(2011)
619_19846595.2 		0.793
ELAVL4
M314_0.6 		Homo sapiens Sequence logo not available KUUUGUUUKKUUU RIP-chip
Cook et al.(2011)
619_19846595.1 		0.793
ELAVL4
M313_0.6 		Homo sapiens Sequence logo not available CYCUCCYUCYCYC RIP-chip
Cook et al.(2011)
619_19846595 		0.793
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000017815 RRM 20 90
ENSDARP00000017815 RRM 106 174
ENSDARP00000017815 RRM 242 312

Links

Other RRM family RBPs
Other Danio rerio RBPs

167 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
elavl1 Danio rerio ENSDARG00000038695 I 0.900
elavl1 Xenopus tropicalis ENSXETG00000008752 I 0.877
AAA96942 Xenopus laevis AAA96942 I 0.877
ELAVL1 Microcebus murinus ENSMICG00000009699 I 0.873
Elavl1 Rattus norvegicus ENSRNOG00000001069 I 0.873
ELAVL1 Loxodonta africana ENSLAFG00000004219 I 0.873
D7R608_RABIT Oryctolagus cuniculus ENSOCUG00000015871 I 0.873
Ame_R010167 Ailuropoda melanoleuca Ame_R010167 I 0.873
ELAVL1 Gorilla gorilla ENSGGOG00000006100 I 0.873
ELAVL1 Macaca mulatta ENSMMUG00000006544 I 0.873
Elavl1 Mus musculus ENSMUSG00000040028 I 0.873
ELAVL1 Ochotona princeps ENSOPRG00000009691 I 0.873
ELAVL1 Otolemur garnettii ENSOGAG00000012877 I 0.873
ELAVL1 Oryzias latipes ENSORLG00000012435 I 0.873
ELAVL1 Monodelphis domestica ENSMODG00000005041 I 0.873
ELAVL1 Pan troglodytes ENSPTRG00000010413 I 0.873
ENSPPYG00000009496 Pongo pygmaeus ENSPPYG00000009496 I 0.873
AAH86269 Xenopus laevis AAH86269 I 0.873
ELAVL1 Tarsius syrichta ENSTSYG00000008248 I 0.873
Elavl1 Dipodomys ordii ENSDORG00000009158 I 0.873
ENSCAFG00000018353 Canis familiaris ENSCAFG00000018353 I 0.873
Q5U259 Xenopus laevis Q5U259 I 0.873
ELAVL1 Homo sapiens ENSG00000066044 D 0.873
ELAVL1 Felis catus ENSFCAG00000014947 I 0.873
Q3ZCE2_BOVIN Bos taurus ENSBTAG00000000613 I 0.868
ELAVL1 Meleagris gallopavo ENSMGAG00000001015 I 0.868
ELAVL1 Myotis lucifugus ENSMLUG00000008101 I 0.868
LOC100060819 Equus caballus ENSECAG00000019459 I 0.868
Q9PW24_CHICK Gallus gallus ENSGALG00000000726 I 0.868
ELAVL1 Taeniopygia guttata ENSTGUG00000000118 I 0.868
ELAVL1 Sus scrofa ENSSSCG00000013592 I 0.868
ELAVL1 Gasterosteus aculeatus ENSGACG00000010657 I 0.864
ELAVL1 Tetraodon nigroviridis ENSTNIG00000019823 I 0.863
ELAVL1 Dasypus novemcinctus ENSDNOG00000008797 I 0.858
ELAVL1 Takifugu rubripes ENSTRUG00000004559 I 0.858
ELAVL1 Spermophilus tridecemlineatus ENSSTOG00000009130 I 0.854
ELAVL1 Gasterosteus aculeatus ENSGACG00000013329 I 0.853
ELAVL1 Takifugu rubripes ENSTRUG00000007296 I 0.848
ELAVL1 Oryzias latipes ENSORLG00000000087 I 0.844
Q1JQ73 Xenopus laevis Q1JQ73 I 0.838
AAI16460 Xenopus laevis AAI16460 I 0.838
ELAVL2 Oryzias latipes ENSORLG00000004217 I 0.811
ELAVL2 Cavia porcellus ENSCPOG00000010472 I 0.808
ENSPPYG00000019166 Pongo pygmaeus ENSPPYG00000019166 I 0.808
ELAVL2 Callithrix jacchus ENSCJAG00000008064 I 0.808
ELAVL2 Ochotona princeps ENSOPRG00000012874 I 0.808
ELAVL2 Canis familiaris ENSCAFG00000001688 I 0.808
ELAVL2 Sus scrofa ENSSSCG00000005130 I 0.808
ELAVL2 Tursiops truncatus ENSTTRG00000011656 I 0.808
ELAVL2 Vicugna pacos ENSVPAG00000005109 I 0.808
Ame_R004766 Ailuropoda melanoleuca Ame_R004766 I 0.808
AAH94189 Xenopus laevis AAH94189 I 0.808
AAI70539 Xenopus laevis AAI70539 I 0.808
AAA96943 Xenopus laevis AAA96943 I 0.808
ELAVL2 Anolis carolinensis ENSACAG00000017521 I 0.808
Q91903 Xenopus laevis Q91903 I 0.808
Elavl2 Rattus norvegicus ENSRNOG00000006853 I 0.808
ELAVL2 Sorex araneus ENSSARG00000005702 I 0.808
ELAVL2 Pan troglodytes ENSPTRG00000020830 I 0.808
ELAVL2 Pteropus vampyrus ENSPVAG00000002688 I 0.808
Elavl2 Dipodomys ordii ENSDORG00000010437 I 0.808
LOC708195 Macaca mulatta ENSMMUG00000010038 I 0.808
ELAVL2 Echinops telfairi ENSETEG00000006134 I 0.808
ELAVL2 Equus caballus ENSECAG00000020142 I 0.808
ELAVL2 Homo sapiens ENSG00000107105 D 0.808
ELAVL2 Gorilla gorilla ENSGGOG00000003678 I 0.808
LOC100015949 Monodelphis domestica ENSMODG00000003936 I 0.808
ELAVL2 Loxodonta africana ENSLAFG00000009938 I 0.808
Elavl2 Mus musculus ENSMUSG00000008489 I 0.808
ELAVL2 Oryctolagus cuniculus ENSOCUG00000005891 I 0.808
ELAVL2 Takifugu rubripes ENSTRUG00000007867 I 0.807
ELAVL2 Myotis lucifugus ENSMLUG00000014210 I 0.803
CAA59430 Xenopus laevis CAA59430 I 0.803
ELAVL4 Meleagris gallopavo ENSMGAG00000010928 I 0.798
ELAVL2 Gallus gallus ENSGALG00000015799 I 0.798
ELAVL2 Gasterosteus aculeatus ENSGACG00000019484 I 0.798
ELAVL2 Tetraodon nigroviridis ENSTNIG00000011312 I 0.798
ELAVL4 Procavia capensis ENSPCAG00000008215 I 0.793
ELAVL4 Oryctolagus cuniculus ENSOCUG00000016262 I 0.793
LOC100051268 Equus caballus ENSECAG00000022284 I 0.793
ELAVL4 Gorilla gorilla ENSGGOG00000000634 I 0.793
ELAVL4 Tarsius syrichta ENSTSYG00000004130 I 0.793
ELAVL4 Loxodonta africana ENSLAFG00000001087 I 0.793
ENSCPOG00000002044 Cavia porcellus ENSCPOG00000002044 I 0.793
ELAVL4 Tetraodon nigroviridis ENSTNIG00000015485 I 0.793
ELAVL4 Otolemur garnettii ENSOGAG00000016990 I 0.793
ELAVL4 Monodelphis domestica ENSMODG00000001300 I 0.793
ELAVL4 Oryzias latipes ENSORLG00000017130 I 0.793
ELAVL4 Vicugna pacos ENSVPAG00000011606 I 0.793
CBF67567 Xenopus laevis CBF67567 I 0.793
AAA96945 Xenopus laevis AAA96945 I 0.793
ELAVL4 Homo sapiens ENSG00000162374 D 0.793
AAH99348 Xenopus laevis AAH99348 I 0.793
Ame_R009760 Ailuropoda melanoleuca Ame_R009760 I 0.793
CBU92440 Xenopus laevis CBU92440 I 0.793
elavl4 Xenopus tropicalis ENSXETG00000008680 I 0.793
Q9PW22_CHICK Gallus gallus ENSGALG00000010533 I 0.793
ELAVL4 Erinaceus europaeus ENSEEUG00000008766 I 0.793
ELAVL4 Callithrix jacchus ENSCJAG00000013725 I 0.793
ELAVL4 Anolis carolinensis ENSACAG00000004527 I 0.793
ELAVL4 Takifugu rubripes ENSTRUG00000000523 I 0.793
ELAVL4 Myotis lucifugus ENSMLUG00000006226 I 0.793
A2VDK5_BOVIN Bos taurus ENSBTAG00000021046 I 0.793
ELAVL4 Microcebus murinus ENSMICG00000003286 I 0.793
ELAVL4 Taeniopygia guttata ENSTGUG00000008597 I 0.793
ELAVL4 Choloepus hoffmanni ENSCHOG00000002464 I 0.793
ELAVL4 Canis familiaris ENSCAFG00000003927 I 0.793
ENSPPYG00000001367 Pongo pygmaeus ENSPPYG00000001367 I 0.793
ELAVL4 Pan troglodytes ENSPTRG00000000723 I 0.793
ELAVL4 Macaca mulatta ENSMMUG00000021933 I 0.793
ELAVL4 Dasypus novemcinctus ENSDNOG00000002932 I 0.793
ELAVL4 Ochotona princeps ENSOPRG00000015300 I 0.793
ELAVL4 Sorex araneus ENSSARG00000010733 I 0.793
Elavl4 Rattus norvegicus ENSRNOG00000023601 I 0.793
ELAVL4 Macropus eugenii ENSMEUG00000007145 I 0.793
Elavl4 Dipodomys ordii ENSDORG00000012729 I 0.793
Elavl4 Mus musculus ENSMUSG00000028546 I 0.793
ELAVL2 Tarsius syrichta ENSTSYG00000013066 I 0.791
elavl4 Danio rerio ENSDARG00000045639 I 0.791
ELAVL4 Gasterosteus aculeatus ENSGACG00000011152 I 0.789
ELAVL2 Taeniopygia guttata ENSTGUG00000001349 I 0.789
elavl2 Danio rerio ENSDARG00000040732 I 0.789
ELAVL3 Gasterosteus aculeatus ENSGACG00000013839 I 0.787
ELAVL3 Takifugu rubripes ENSTRUG00000010719 I 0.787
elavl3 Danio rerio ENSDARG00000014420 I 0.787
ELAVL3 Oryzias latipes ENSORLG00000005379 I 0.779
AAA96944 Xenopus laevis AAA96944 I 0.778
Q91584 Xenopus laevis Q91584 I 0.778
ELAVL3 Macropus eugenii ENSMEUG00000016706 I 0.778
AAI69769 Xenopus laevis AAI69769 I 0.778
ELAVL3 Tetraodon nigroviridis ENSTNIG00000018572 I 0.776
elavl3 Xenopus tropicalis ENSXETG00000016741 I 0.775
ELAVL3 Anolis carolinensis ENSACAG00000016958 I 0.774
ELAVL3 Bos taurus ENSBTAG00000014412 I 0.768
ELAVL3 Canis familiaris ENSCAFG00000017350 I 0.768
ELAVL3 Tursiops truncatus ENSTTRG00000001789 I 0.768
ELAVL3 Pteropus vampyrus ENSPVAG00000014893 I 0.768
ELAVL3 Sus scrofa ENSSSCG00000013617 I 0.768
ELAVL2 Procavia capensis ENSPCAG00000014998 I 0.768
Elavl3 Mus musculus ENSMUSG00000003410 I 0.768
ELAVL3 Otolemur garnettii ENSOGAG00000007072 I 0.768
ELAVL3 Loxodonta africana ENSLAFG00000005013 I 0.768
Elavl3 Rattus norvegicus ENSRNOG00000013752 I 0.768
ELAVL3 Gorilla gorilla ENSGGOG00000008635 I 0.768
Ame_R009570 Ailuropoda melanoleuca Ame_R009570 I 0.768
ELAVL3 Homo sapiens ENSG00000196361 I 0.768
Elavl3 Dipodomys ordii ENSDORG00000002538 I 0.758
ELAVL3 Monodelphis domestica ENSMODG00000006653 I 0.754
ELAVL3 Pan troglodytes ENSPTRG00000010506 I 0.744
ELAVL4 Pteropus vampyrus ENSPVAG00000003632 I 0.744
ELAVL1 Sorex araneus ENSSARG00000013091 I 0.731
ELAVL2 Ornithorhynchus anatinus ENSOANG00000009634 I 0.730
ELAVL1 Cavia porcellus ENSCPOG00000011884 I 0.730
ELAVL1 Procavia capensis ENSPCAG00000016012 I 0.725
ENSCHOG00000006810 Choloepus hoffmanni ENSCHOG00000006810 I 0.725
ELAVL1 Echinops telfairi ENSETEG00000012985 I 0.725
ELAVL1 Pteropus vampyrus ENSPVAG00000002299 I 0.722
nasonia_NCBI_hmm330804 Nasonia vitripennis nasonia_NCBI_hmm330804 I 0.722
amel4_ncbi_hmm5219 Apis mellifera amel4_ncbi_hmm5219 I 0.717
ELAVL1 Tursiops truncatus ENSTTRG00000010180 I 0.717
ELAVL1 Callithrix jacchus ENSCJAG00000031727 I 0.714
ELAVL1 Macropus eugenii ENSMEUG00000010702 I 0.712
ELAVL1 Tetraodon nigroviridis ENSTNIG00000004733 I 0.711
fgenesh2_pg.scaffold_219000066 Branchiostoma floridae fgenesh2_pg.scaffold_219000066 I 0.709
ENSCSAVG00000003440 Ciona savignyi ENSCSAVG00000003440 I 0.704
CPIJ016143 Culex quinquefasciatus CPIJ016143 I 0.703
CpipJ_CPIJ016143 Culex pipiens CpipJ_CPIJ016143 I 0.703