HNRNPAB (Takifugu rubripes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSTRUG00000008411 T42268_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.814
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.779
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000021063 RRM 67 136
ENSTRUP00000021063 RRM 151 220
ENSTRUP00000021064 RRM 27 96
ENSTRUP00000021064 RRM 111 180

Links

Other RRM family RBPs
Other Takifugu rubripes RBPs

43 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.929
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.844
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.843
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.829
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.829
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.829
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.829
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.829
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.829
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.821
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.821
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.821
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.821
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.821
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.821
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.814
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.814
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.814
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.814
HNRNPAB Homo sapiens ENSG00000197451 D 0.814
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.814
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.814
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.810
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.801
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.786
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.786
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.786
AAH43814 Xenopus laevis AAH43814 I 0.779
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.779
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.779
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.779
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.779
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.779
ABV54637 Xenopus laevis ABV54637 I 0.771
AAH74212 Xenopus laevis AAH74212 I 0.771
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.764
HNRNPAB Danio rerio ENSDARG00000017568 I 0.757
hnrnpab Danio rerio ENSDARG00000007960 I 0.757
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.750
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.736
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.729
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.723