Q90626_CHICK (Gallus gallus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSGALG00000014381 T37718_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.936
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.814
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSGALP00000023188 RRM 2 71
ENSGALP00000023188 RRM 86 155
ENSGALP00000023189 RRM 2 71
ENSGALP00000023189 RRM 86 155

Links

Other RRM family RBPs
Other Gallus gallus RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 1.000
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 1.000
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.950
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.936
HNRNPAB Homo sapiens ENSG00000197451 D 0.936
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.936
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.936
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.936
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.929
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.929
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.929
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.929
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.929
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.929
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.929
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.929
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.929
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.921
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.921
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.921
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.921
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.915
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.914
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.908
AAH43814 Xenopus laevis AAH43814 I 0.907
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.907
ABV54637 Xenopus laevis ABV54637 I 0.900
AAH74212 Xenopus laevis AAH74212 I 0.900
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.893
hnrnpab Danio rerio ENSDARG00000007960 I 0.871
HNRNPAB Danio rerio ENSDARG00000017568 I 0.864
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.836
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.836
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.821
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.821
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.821
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.814
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.814
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.814
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.814
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.794
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.787
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.775
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.755
HNRNPD Homo sapiens ENSG00000138668 I 0.754
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.754
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.754
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.754
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.754
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.754
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.754
AAH97855 Xenopus laevis AAH97855 I 0.754
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.754
LOC100060733 Equus caballus ENSECAG00000009344 I 0.754
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.754
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.754
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.754
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.754
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.754
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.754
AAU25946 Xenopus laevis AAU25946 I 0.754
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.754
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.754
HNRNPAB Tursiops truncatus ENSTTRG00000010604 I 0.750
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.748
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.748
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.748
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.748
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.748
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.748
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.748
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.748
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.748
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.748
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.746
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.745
HNRNPD Sorex araneus ENSSARG00000006883 I 0.745
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.741
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.741
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.739
hnrnpd Danio rerio ENSDARG00000059246 I 0.739
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.730
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.730
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.725
HNRNPD Procavia capensis ENSPCAG00000002182 I 0.718
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.707
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.707
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.707
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.700
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.700
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.700
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.700
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.700
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.700
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.700
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.700
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.700
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.700
HNRPDL Homo sapiens ENSG00000152795 I 0.700
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.700
HNRNPAB Erinaceus europaeus ENSEEUG00000013226 I 0.700
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.700
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.700
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.700
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.700
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.700
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.700
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.700
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.700
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.700
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.700
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.700
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.700
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.700
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.700
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.700
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.700