ENSCJAG00000032456 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000032456 T35716_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.957
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.771
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000022436 RRM 43 111
ENSCJAP00000022436 RRM 126 195

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

116 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.964
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.964
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.957
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.957
HNRNPAB Homo sapiens ENSG00000197451 D 0.957
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.957
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.950
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.950
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.950
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.950
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.950
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.943
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.936
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.929
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.929
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.929
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.923
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.921
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.907
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.893
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.893
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.893
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.893
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.893
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.886
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.879
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.864
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.864
ABV54637 Xenopus laevis ABV54637 I 0.864
AAH74212 Xenopus laevis AAH74212 I 0.864
AAH43814 Xenopus laevis AAH43814 I 0.850
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.823
hnrnpab Danio rerio ENSDARG00000007960 I 0.814
HNRNPAB Danio rerio ENSDARG00000017568 I 0.807
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.800
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.793
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.786
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.779
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.779
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.779
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.773
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.771
HNRNPAB Tursiops truncatus ENSTTRG00000010604 I 0.757
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.745
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.741
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.734
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.732
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.732
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.732
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.732
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.732
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.732
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.732
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.732
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.732
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.732
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.732
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.732
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.732
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.732
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.732
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.732
LOC100060733 Equus caballus ENSECAG00000009344 I 0.732
HNRNPD Homo sapiens ENSG00000138668 I 0.732
hnrnpd Danio rerio ENSDARG00000059246 I 0.732
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.727
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.727
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.727
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.727
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.727
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.727
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.727
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.727
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.727
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.725
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.725
LOC100069254 Equus caballus ENSECAG00000014816 I 0.725
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.725
HNRNPD Sorex araneus ENSSARG00000006883 I 0.723
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.723
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.720
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.720
HNRNPD Takifugu rubripes ENSTRUG00000018450 I 0.716
HNRNPAB Erinaceus europaeus ENSEEUG00000013226 I 0.712
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.707
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.707
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.707
AAU25946 Xenopus laevis AAU25946 I 0.704
AAH97855 Xenopus laevis AAH97855 I 0.704
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.700
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.700
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.700
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.700
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.700
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.700
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.700
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.700
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.700
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.700
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.700
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.700
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.700
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.700
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.700
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.700
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.700
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.700
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.700
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.700
HNRPDL Homo sapiens ENSG00000152795 I 0.700
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.700
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.700
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.700
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.700
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.700
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.700