HNRNPAB (Oryzias latipes)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSORLG00000015501 T40233_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.794
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.738
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSORLP00000019409 RRM 58 127
ENSORLP00000019409 RRM 142 205
ENSORLP00000019411 RRM 58 127
ENSORLP00000019411 RRM 142 212

Links

Other RRM family RBPs
Other Oryzias latipes RBPs

70 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.929
HNRNPAB Tetraodon nigroviridis ENSTNIG00000007596 I 0.851
HNRNPAB Takifugu rubripes ENSTRUG00000008411 I 0.844
hnrnpab Danio rerio ENSDARG00000007960 I 0.823
Hnrnpab Rattus norvegicus ENSRNOG00000003645 I 0.816
Hnrnpab Mus musculus ENSMUSG00000020358 I 0.816
HNRNPAB Danio rerio ENSDARG00000017568 I 0.816
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.816
HNRNPAB Pteropus vampyrus ENSPVAG00000016742 I 0.816
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.809
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.809
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.809
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.809
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.809
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.809
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.809
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.801
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.801
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.801
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.801
HNRNPAB Homo sapiens ENSG00000197451 D 0.794
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.794
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.794
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.794
LOC100390818 Callithrix jacchus ENSCJAG00000012235 I 0.791
HNRNPAB Oryctolagus cuniculus ENSOCUG00000026424 I 0.790
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.787
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.787
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.787
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.787
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.787
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.780
AAH43814 Xenopus laevis AAH43814 I 0.780
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.773
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.773
ABV54637 Xenopus laevis ABV54637 I 0.773
AAH74212 Xenopus laevis AAH74212 I 0.773
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.766
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.752
ENSGGOG00000028444 Gorilla gorilla ENSGGOG00000028444 I 0.745
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.738
HNRNPAB Sus scrofa ENSSSCG00000001932 I 0.704
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.702
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.702
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.702
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.702
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.702
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.702
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.702
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.702
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.702
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.702
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.702
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.702
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.702
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.702
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.702
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.702
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.702
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.702
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.702
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.702
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.702
HNRPDL Homo sapiens ENSG00000152795 I 0.702
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.702
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.702
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.702
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.702
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.702