hnrpdl (Xenopus tropicalis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSXETG00000023026 T42949_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.707
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSXETP00000027520 RRM 28 97
ENSXETP00000027520 RRM 113 181

Links

Other RRM family RBPs
Other Xenopus tropicalis RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
CBF67671 Xenopus laevis CBF67671 N 0.978
CBU92545 Xenopus laevis CBU92545 N 0.978
Q7ZX83 Xenopus laevis Q7ZX83 N 0.978
AAH68788 Xenopus laevis AAH68788 N 0.978
Q6NU14 Xenopus laevis Q6NU14 N 0.978
AAH45124 Xenopus laevis AAH45124 N 0.978
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 0.921
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 0.921
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 0.921
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 0.921
LOC100412686 Callithrix jacchus ENSCJAG00000015197 I 0.921
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 0.921
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 0.921
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 0.921
HNRPDL Homo sapiens ENSG00000152795 I 0.921
Hnrpdl Mus musculus ENSMUSG00000029328 I 0.921
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 0.921
HNRPDL Microcebus murinus ENSMICG00000001445 I 0.921
HNRPDL Macaca mulatta ENSMMUG00000015777 I 0.921
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 0.921
HNRPDL Procavia capensis ENSPCAG00000011543 I 0.921
HNRPDL Ochotona princeps ENSOPRG00000007178 I 0.921
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.921
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 0.921
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 0.921
HNRPDL Pan troglodytes ENSPTRG00000016217 I 0.921
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 0.921
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 0.921
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 0.921
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 0.921
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 0.921
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.914
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.914
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.914
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.914
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.914
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.914
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.907
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.907
HNRPDL Otolemur garnettii ENSOGAG00000002501 N 0.900
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.900
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.893
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.886
ENSCHOG00000003275 Choloepus hoffmanni ENSCHOG00000003275 N 0.879
HNRPDL Felis catus ENSFCAG00000000455 N 0.871
ENSCAFG00000005858 Canis familiaris ENSCAFG00000005858 N 0.871
hnrpdl Danio rerio ENSDARG00000003429 N 0.829
ENSCHOG00000009204 Choloepus hoffmanni ENSCHOG00000009204 N 0.813
HNRPDL Callithrix jacchus ENSCJAG00000004101 N 0.791
HNRPDL Pteropus vampyrus ENSPVAG00000006816 N 0.779
HNRPDL Macropus eugenii ENSMEUG00000010033 N 0.775
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.714
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.714
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.714
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.714
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.714
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.714
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.714
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.714
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.707
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.707
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.707
AAH43814 Xenopus laevis AAH43814 I 0.707
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.707
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.707
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.707
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.707
HNRNPAB Homo sapiens ENSG00000197451 D 0.707
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.702
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.700
HNRNPD Sorex araneus ENSSARG00000006883 I 0.700
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.700
ABV54637 Xenopus laevis ABV54637 I 0.700
AAH74212 Xenopus laevis AAH74212 I 0.700
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.700
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.700
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.700
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.700