LOC100412686 (Callithrix jacchus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 ENSCJAG00000015197 T35621_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
HNRNPAB
M301_0.6 		Homo sapiens Sequence logo not available ACAAAGACAAA SELEX
Cook et al.(2011)
39_12419250 		0.714
HNRNPAB
M210_0.6 		Tetraodon nigroviridis WRGWUAG RNAcompete
Ray et al.(2013)
RNCMPT00245 		0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000028055 RRM 1 39
ENSCJAP00000028093 RRM 31 100
ENSCJAP00000028093 RRM 116 185
ENSCJAP00000028096 RRM 150 219
ENSCJAP00000028096 RRM 235 304
ENSCJAP00000044699 RRM 1 70
ENSCJAP00000044699 RRM 86 155
ENSCJAP00000048904 RRM 150 219
ENSCJAP00000048904 RRM 235 304

Links

Other RRM family RBPs
Other Callithrix jacchus RBPs

126 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
HNRPDL Homo sapiens ENSG00000152795 I 1.000
HNRPDL Procavia capensis ENSPCAG00000011543 I 1.000
ENSPPYG00000014886 Pongo pygmaeus ENSPPYG00000014886 I 1.000
ENSCHOG00000000160 Choloepus hoffmanni ENSCHOG00000000160 I 1.000
HNRPDL Ochotona princeps ENSOPRG00000007178 I 1.000
HNRPDL Oryctolagus cuniculus ENSOCUG00000013805 I 1.000
HNRPDL Microcebus murinus ENSMICG00000001445 I 1.000
HNRPDL Gorilla gorilla ENSGGOG00000003714 I 1.000
HNRPDL Macaca mulatta ENSMMUG00000015777 I 1.000
Hnrpdl Mus musculus ENSMUSG00000029328 I 1.000
HNRPDL Ornithorhynchus anatinus ENSOANG00000004651 I 1.000
ENSLAFG00000008612 Loxodonta africana ENSLAFG00000008612 I 1.000
HNRPDL Pan troglodytes ENSPTRG00000016217 I 1.000
Q6X9Z3_HORSE Equus caballus ENSECAG00000022692 I 1.000
A4IF81_BOVIN Bos taurus ENSBTAG00000014804 I 1.000
ENSCPOG00000015619 Cavia porcellus ENSCPOG00000015619 I 1.000
Ame_R000242 Ailuropoda melanoleuca Ame_R000242 I 1.000
HNRPDL Tupaia belangeri ENSTBEG00000002817 I 1.000
ENSDNOG00000003887 Dasypus novemcinctus ENSDNOG00000003887 I 1.000
ENSCAFG00000008940 Canis familiaris ENSCAFG00000008940 I 1.000
ENSDORG00000000968 Dipodomys ordii ENSDORG00000000968 I 1.000
D3ZN89_RAT Rattus norvegicus ENSRNOG00000002270 I 1.000
HNRPDL Spermophilus tridecemlineatus ENSSTOG00000013979 I 1.000
ENSMEUG00000011454 Macropus eugenii ENSMEUG00000011454 I 0.993
HNRPDL Meleagris gallopavo ENSMGAG00000008033 I 0.993
HNRPDL Taeniopygia guttata ENSTGUG00000002850 I 0.993
HNRPDL Tursiops truncatus ENSTTRG00000001793 I 0.993
ENSMODG00000011916 Monodelphis domestica ENSMODG00000011916 I 0.993
HNRDL_CHICK Gallus gallus ENSGALG00000023199 I 0.993
LOC100404672 Callithrix jacchus ENSCJAG00000005154 I 0.986
HNRPDL Myotis lucifugus ENSMLUG00000014452 I 0.986
HNRPDL Erinaceus europaeus ENSEEUG00000004301 I 0.986
HNRPDL Anolis carolinensis ENSACAG00000010416 N 0.974
ENSCHOG00000010831 Choloepus hoffmanni ENSCHOG00000010831 N 0.971
HNRPDL Otolemur garnettii ENSOGAG00000002501 N 0.964
ENSMODG00000006825 Monodelphis domestica ENSMODG00000006825 I 0.964
ENSCHOG00000002938 Choloepus hoffmanni ENSCHOG00000002938 N 0.964
ENSCHOG00000003275 Choloepus hoffmanni ENSCHOG00000003275 N 0.950
HNRPDL Felis catus ENSFCAG00000000455 N 0.950
ENSCAFG00000005858 Canis familiaris ENSCAFG00000005858 N 0.943
hnrpdl Xenopus tropicalis ENSXETG00000023026 I 0.921
CBU92545 Xenopus laevis CBU92545 N 0.914
AAH68788 Xenopus laevis AAH68788 N 0.914
CBF67671 Xenopus laevis CBF67671 N 0.914
Q6NU14 Xenopus laevis Q6NU14 N 0.914
AAH45124 Xenopus laevis AAH45124 N 0.900
Q7ZX83 Xenopus laevis Q7ZX83 N 0.900
ENSCHOG00000009204 Choloepus hoffmanni ENSCHOG00000009204 N 0.879
hnrpdl Danio rerio ENSDARG00000003429 N 0.857
HNRPDL Macropus eugenii ENSMEUG00000010033 N 0.838
HNRPDL Callithrix jacchus ENSCJAG00000004101 N 0.836
HNRPDL Pteropus vampyrus ENSPVAG00000006816 N 0.829
HNRPDL Sorex araneus ENSSARG00000009961 N 0.736
HNRNPAB Oryzias latipes ENSORLG00000005327 I 0.736
hnrnpab Xenopus tropicalis ENSXETG00000003836 I 0.729
HNRNPAB Takifugu rubripes ENSTRUG00000000612 I 0.729
HNRNPD Meleagris gallopavo ENSMGAG00000008051 I 0.727
HNRNPD Ornithorhynchus anatinus ENSOANG00000001932 I 0.727
Q5ZIH1_CHICK Gallus gallus ENSGALG00000011184 I 0.727
LOC100060733 Equus caballus ENSECAG00000009344 I 0.725
HNRNPD Spermophilus tridecemlineatus ENSSTOG00000013970 I 0.725
HNRNPD Canis familiaris ENSCAFG00000025045 I 0.725
HNRNPD Pteropus vampyrus ENSPVAG00000000003 I 0.725
LOC100400250 Callithrix jacchus ENSCJAG00000015165 I 0.725
HNRNPD Tursiops truncatus ENSTTRG00000007592 I 0.725
HNRNPD Taeniopygia guttata ENSTGUG00000002858 I 0.725
A5D9H5_BOVIN Bos taurus ENSBTAG00000013952 I 0.725
hnrnpd Xenopus tropicalis ENSXETG00000012569 I 0.725
HNRNPD Homo sapiens ENSG00000138668 I 0.725
HNRNPD Gorilla gorilla ENSGGOG00000026760 I 0.725
HNRNPD Ochotona princeps ENSOPRG00000009336 I 0.725
Hnrnpd Mus musculus ENSMUSG00000000568 I 0.725
HNRNPD Monodelphis domestica ENSMODG00000011898 I 0.725
HNRNPD Macaca mulatta ENSMMUG00000014030 I 0.725
ENSPPYG00000014885 Pongo pygmaeus ENSPPYG00000014885 I 0.725
HNRNPD Echinops telfairi ENSETEG00000016709 I 0.725
HNRNPD Pan troglodytes ENSPTRG00000016215 I 0.725
Ame_R012484 Ailuropoda melanoleuca Ame_R012484 I 0.721
HNRNPAB Macaca mulatta ENSMMUG00000003996 I 0.721
HNRNPAB Anolis carolinensis ENSACAG00000016946 I 0.721
HNRNPD Microcebus murinus ENSMICG00000010984 I 0.720
LOC100397832 Callithrix jacchus ENSCJAG00000031195 I 0.720
Ame_R000243 Ailuropoda melanoleuca Ame_R000243 I 0.720
HNRNPD Loxodonta africana ENSLAFG00000016483 I 0.720
HNRNPD Vicugna pacos ENSVPAG00000004374 I 0.720
HNRNPD Oryctolagus cuniculus ENSOCUG00000001357 I 0.720
HNRNPD Tarsius syrichta ENSTSYG00000010395 I 0.720
HNRNPD Anolis carolinensis ENSACAG00000010342 I 0.720
Hnrpd Rattus norvegicus ENSRNOG00000002292 I 0.718
HNRNPD Erinaceus europaeus ENSEEUG00000007552 I 0.716
HNRNPD Sorex araneus ENSSARG00000006883 I 0.716
Q3ZC44_BOVIN Bos taurus ENSBTAG00000013627 I 0.714
AAH43814 Xenopus laevis AAH43814 I 0.714
ABV54637 Xenopus laevis ABV54637 I 0.714
AAH74212 Xenopus laevis AAH74212 I 0.714
HNRNPAB Ochotona princeps ENSOPRG00000002546 I 0.714
HNRNPAB Gasterosteus aculeatus ENSGACG00000018116 I 0.714
HNRNPAB Gasterosteus aculeatus ENSGACG00000020830 I 0.714
HNRNPAB Homo sapiens ENSG00000197451 D 0.714
ENSECAG00000018242 Equus caballus ENSECAG00000018242 I 0.714
HNRNPAB Cavia porcellus ENSCPOG00000025972 I 0.714
HNRNPAB Dasypus novemcinctus ENSDNOG00000013820 I 0.714
HNRNPAB Gorilla gorilla ENSGGOG00000011692 I 0.714
HNRNPAB Loxodonta africana ENSLAFG00000001189 I 0.714
XR_022913.1 Pan troglodytes ENSPTRG00000017601 I 0.714
HNRNPAB Canis familiaris ENSCAFG00000000241 I 0.714
HNRNPAB Tetraodon nigroviridis ENSTNIG00000010512 D 0.714
HNRNPD Choloepus hoffmanni ENSCHOG00000000045 I 0.713
Hnrnpd Dipodomys ordii ENSDORG00000012507 I 0.713
HNRNPD Oryzias latipes ENSORLG00000001833 I 0.711
HNRNPD Myotis lucifugus ENSMLUG00000010628 I 0.711
HNRNPD Tetraodon nigroviridis ENSTNIG00000013499 I 0.709
HNRNPAB Procavia capensis ENSPCAG00000006760 I 0.707
HNRNPAB Monodelphis domestica ENSMODG00000004217 I 0.707
ENSSSCG00000012473 Sus scrofa ENSSSCG00000012473 N 0.707
HNRNPAB Macropus eugenii ENSMEUG00000007909 I 0.707
HNRNPAB Ornithorhynchus anatinus ENSOANG00000004998 I 0.707
AAU25946 Xenopus laevis AAU25946 I 0.704
AAH97855 Xenopus laevis AAH97855 I 0.704
HNRNPAB Oryzias latipes ENSORLG00000015501 I 0.702
ENSPPYG00000016107 Pongo pygmaeus ENSPPYG00000016107 I 0.702
ENSCJAG00000032456 Callithrix jacchus ENSCJAG00000032456 I 0.700
Q90626_CHICK Gallus gallus ENSGALG00000014381 I 0.700
HNRNPAB Taeniopygia guttata ENSTGUG00000001168 I 0.700
HNRNPAB Meleagris gallopavo ENSMGAG00000007727 I 0.700