CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GK12741
(
Drosophila willistoni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
FBgn0214750
T44155_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0241884
RRM
123
192
LIVGNLDYGVSNMDIKELFNDFGPMKKAAVHYDRSGRSLGTADVIFERRSDALKAIKQYHGVPLDGRPMT
Links
Other
RRM
family RBPs
Other
Drosophila willistoni
RBPs
67 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GI23076
Drosophila mojavensis
FBgn0145803
N
0.986
GH18594
Drosophila grimshawi
FBgn0126061
N
0.986
GJ22697
Drosophila virilis
FBgn0209801
N
0.986
aly
Drosophila yakuba
FBgn0068000
N
0.971
GG10124
Drosophila erecta
FBgn0102435
N
0.971
GF17326
Drosophila ananassae
FBgn0094344
N
0.971
GD19510
Drosophila simulans
FBgn0191006
N
0.957
GM10513
Drosophila sechellia
FBgn0165460
N
0.957
Aly
Drosophila melanogaster
FBgn0010774
N
0.957
GA10707-RA
Drosophila pseudoobscura
FBgn0070763
N
0.914
GL12678
Drosophila persimilis
FBgn0150284
N
0.914
THOC4
Tetraodon nigroviridis
ENSTNIG00000011595
N
0.786
Thoc4
Mus musculus
ENSMUSG00000025134
N
0.771
THOC4
Macaca mulatta
ENSMMUG00000012884
N
0.771
THOC4
Monodelphis domestica
ENSMODG00000003030
N
0.771
THOC4
Microcebus murinus
ENSMICG00000017403
N
0.771
THOC4
Gallus gallus
ENSGALG00000007237
N
0.771
Refbp2
Mus musculus
ENSMUSG00000060244
N
0.771
THOC4
Gorilla gorilla
ENSGGOG00000013935
N
0.771
THOC4
Loxodonta africana
ENSLAFG00000003083
N
0.771
ENSMGAG00000005389
Meleagris gallopavo
ENSMGAG00000005389
N
0.771
THOC4
Pteropus vampyrus
ENSPVAG00000017866
N
0.771
ENSTBEG00000005834
Tupaia belangeri
ENSTBEG00000005834
N
0.771
THOC4
Tursiops truncatus
ENSTTRG00000012275
N
0.771
thoc4
Xenopus tropicalis
ENSXETG00000005391
N
0.771
Thoc4
Rattus norvegicus
ENSRNOG00000036687
N
0.771
ISCW001860
Ixodes scapularis
ISCW001860
N
0.771
THOC4
Oryzias latipes
ENSORLG00000012331
N
0.771
ENSPPYG00000008749
Pongo pygmaeus
ENSPPYG00000008749
N
0.771
THOC4
Pan troglodytes
ENSPTRG00000009774
N
0.771
THOC4
Otolemur garnettii
ENSOGAG00000012409
N
0.771
THOC4
Echinops telfairi
ENSETEG00000016596
N
0.771
CpipJ_CPIJ007834
Culex pipiens
CpipJ_CPIJ007834
N
0.771
AAEL015263
Aedes aegypti
AAEL015263
N
0.771
CPIJ007834
Culex quinquefasciatus
CPIJ007834
N
0.771
Q58EA2
Xenopus laevis
Q58EA2
N
0.771
AAH92013
Xenopus laevis
AAH92013
N
0.771
Ame_R000656
Ailuropoda melanoleuca
Ame_R000656
N
0.771
XP_001185635.1
Strongylocentrotus purpuratus
XP_001185635.1
N
0.771
XP_782040.2
Strongylocentrotus purpuratus
XP_782040.2
N
0.771
THOC4
Anolis carolinensis
ENSACAG00000010526
N
0.771
AAEL005114
Aedes aegypti
AAEL005114
N
0.771
THOC4_BOVIN
Bos taurus
ENSBTAG00000008498
N
0.771
LOC100055097
Equus caballus
ENSECAG00000018754
N
0.771
THOC4
Homo sapiens
ENSG00000183684
N
0.771
THOC4
Cavia porcellus
ENSCPOG00000013710
N
0.771
tho4
Danio rerio
ENSDARG00000077732
N
0.771
THOC4
Canis familiaris
ENSCAFG00000005877
N
0.771
amel4_ncbi_hmm10980
Apis mellifera
amel4_ncbi_hmm10980
N
0.757
PASA_GEN_1400063
Daphnia pulex
PASA_GEN_1400063
N
0.757
AAH74336
Xenopus laevis
AAH74336
N
0.757
AGAP006733
Anopheles gambiae
AGAP006733
N
0.757
THOC4
Gasterosteus aculeatus
ENSGACG00000013328
N
0.757
Q6GLW1
Xenopus laevis
Q6GLW1
N
0.757
e_gw.5.817.1
Branchiostoma floridae
e_gw.5.817.1
N
0.729
e_gw.394.68.1
Branchiostoma floridae
e_gw.394.68.1
N
0.729
Aqu1.225634
Amphimedon queenslandica
Aqu1.225634
N
0.729
ENSCJAG00000021543
Callithrix jacchus
ENSCJAG00000021543
N
0.729
BGIBMGA005323
Bombyx mori
BGIBMGA005323
N
0.729
THOC4
Erinaceus europaeus
ENSEEUG00000010164
N
0.714
ENSMLUG00000009555
Myotis lucifugus
ENSMLUG00000009555
N
0.714
THOC4
Takifugu rubripes
ENSTRUG00000008828
N
0.714
ENSGACG00000018178
Gasterosteus aculeatus
ENSGACG00000018178
N
0.700
PHUM023420
Pediculus humanus
PHUM023420
N
0.700
Smp_108820
Schistosoma mansoni
Smp_108820
N
0.700
nasonia_NCBI_hmm488134
Nasonia vitripennis
nasonia_NCBI_hmm488134
N
0.700
ENSTRUG00000003051
Takifugu rubripes
ENSTRUG00000003051
N
0.700