cassava40632.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava40632.m1 T49383_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava40632.m1 RRM 1 64

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29806.m000954 Ricinus communis 29806.m000954 N 0.899
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.884
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.884
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.870
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.870
MDP0000258062 Malus x domestica MDP0000258062 N 0.859
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.855
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.853
MDP0000562891 Malus x domestica MDP0000562891 N 0.846
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.841
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.841
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.836
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.833
MDP0000623378 Malus x domestica MDP0000623378 N 0.833
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.826
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.826
PK03244.1 Cannabis sativa PK03244.1 N 0.826
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.826
mgf014092m Mimulus guttatus mgf014092m N 0.826
ppa011157m Prunus persica ppa011157m N 0.826
MDP0000186271 Malus x domestica MDP0000186271 N 0.824
MDP0000123472 Malus x domestica MDP0000123472 N 0.821
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.815
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.812
PK11764.1 Cannabis sativa PK11764.1 N 0.812
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.812
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.812
29772.m000320 Ricinus communis 29772.m000320 N 0.812
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.812
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.812
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.803
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.797
mgf007186m Mimulus guttatus mgf007186m N 0.797
PK23225.1 Cannabis sativa PK23225.1 N 0.797
MDP0000243651 Malus x domestica MDP0000243651 N 0.797
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.783
30147.m014356 Ricinus communis 30147.m014356 N 0.783
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.783
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.783
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.783
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.783
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.783
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.783
mgf006490m Mimulus guttatus mgf006490m N 0.783
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.783
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.783
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.783
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.783
ppa010052m Prunus persica ppa010052m N 0.783
mgf005737m Mimulus guttatus mgf005737m N 0.783
30147.m014359 Ricinus communis 30147.m014359 N 0.783
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.768
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.768
SB10G007620 Sorghum bicolor Sb10g007620 N 0.768
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.768
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.768
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.768
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.768
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.768
mgf023117m Mimulus guttatus mgf023117m N 0.768
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.768
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.768
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.754
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.754
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.754
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.754
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.754
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.739
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.725
SB01G028780 Sorghum bicolor Sb01g028780 N 0.710
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.710
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.710