B9GGB8_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0001s31900 T45433_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s31900.1 RRM 120 188

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29806.m000954 Ricinus communis 29806.m000954 N 0.942
cassava43221.valid.m1 Manihot esculenta cassava43221.valid.m1 N 0.928
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.928
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.928
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.913
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.913
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.899
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.870
mgf014092m Mimulus guttatus mgf014092m N 0.870
PK03244.1 Cannabis sativa PK03244.1 N 0.855
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.855
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.841
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.841
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.841
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.841
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.841
ppa011157m Prunus persica ppa011157m N 0.841
29772.m000320 Ricinus communis 29772.m000320 N 0.841
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.826
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.826
PK11764.1 Cannabis sativa PK11764.1 N 0.826
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.826
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.826
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.826
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.826
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.826
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.812
mgf007186m Mimulus guttatus mgf007186m N 0.812
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.812
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.812
30147.m014359 Ricinus communis 30147.m014359 N 0.797
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.797
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.797
PK23225.1 Cannabis sativa PK23225.1 N 0.797
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.797
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.797
SB10G007620 Sorghum bicolor Sb10g007620 N 0.797
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.797
MDP0000243651 Malus x domestica MDP0000243651 N 0.797
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.797
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.797
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.797
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.783
mgf023117m Mimulus guttatus mgf023117m N 0.783
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.783
ppa010052m Prunus persica ppa010052m N 0.783
mgf006490m Mimulus guttatus mgf006490m N 0.783
30147.m014356 Ricinus communis 30147.m014356 N 0.783
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.783
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.783
mgf005737m Mimulus guttatus mgf005737m N 0.783
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.783
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.783
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.783
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.783
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.768
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.768
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.768
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.754
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.754
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.754
SB01G028780 Sorghum bicolor Sb01g028780 N 0.754
MDP0000186271 Malus x domestica MDP0000186271 N 0.754
MDP0000123472 Malus x domestica MDP0000123472 N 0.754
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.754
MDP0000258062 Malus x domestica MDP0000258062 N 0.754
MDP0000562891 Malus x domestica MDP0000562891 N 0.754
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.754
MDP0000623378 Malus x domestica MDP0000623378 N 0.754
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.725
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.710
CNBG_5499 Cryptococcus neoformans CNBG_5499 N 0.700