cassava43221.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava43221.valid.m1 T49406_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava43221.valid.m1 RRM 71 139

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

74 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.398220 Cucumis sativus Cucsa.398220 N 0.986
29806.m000954 Ricinus communis 29806.m000954 N 0.986
Glyma08g18970.1 Glycine max Glyma08g18970.1 N 0.957
Glyma15g06030.1 Glycine max Glyma15g06030.1 N 0.942
B9IJE1_POPTR Populus trichocarpa POPTR_0017s07850 N 0.942
PK03244.1 Cannabis sativa PK03244.1 N 0.928
B9GGB8_POPTR Populus trichocarpa POPTR_0001s31900 N 0.928
Glyma05g31030.1 Glycine max Glyma05g31030.1 N 0.913
Glyma08g14240.1 Glycine max Glyma08g14240.1 N 0.913
Medtr4g120660 Medicago truncatula Medtr4g120660 N 0.913
GSVIVG00015755001 Vitis vinifera GSVIVG00015755001 N 0.913
cassava28879.valid.m1 Manihot esculenta cassava28879.valid.m1 N 0.913
cassava31160.valid.m1 Manihot esculenta cassava31160.valid.m1 N 0.899
PK11764.1 Cannabis sativa PK11764.1 N 0.899
mgf014092m Mimulus guttatus mgf014092m N 0.884
Cucsa.093720 Cucumis sativus Cucsa.093720 N 0.884
29772.m000320 Ricinus communis 29772.m000320 N 0.884
cassava40632.m1 Manihot esculenta cassava40632.m1 N 0.884
ppa011157m Prunus persica ppa011157m N 0.884
AT5G65260 Arabidopsis thaliana AT5G65260-TAIR-G N 0.870
PK23225.1 Cannabis sativa PK23225.1 N 0.870
XM_002866615.1 Arabidopsis lyrata scaffold_803257.1 N 0.870
SB10G007620 Sorghum bicolor Sb10g007620 N 0.870
MDP0000243651 Malus x domestica MDP0000243651 N 0.870
PDK_20s1311211g001 Phoenix dactylifera PDK_20s1311211g001 N 0.870
30147.m014359 Ricinus communis 30147.m014359 N 0.870
e_gw1.0.1424.1 Selaginella moellendorfii e_gw1.0.1424.1 N 0.870
GRMZM2G082198 Zea mays GRMZM2G082198 N 0.870
Cucsa.104260 Cucumis sativus Cucsa.104260 N 0.870
estExt_fgenesh1_pg.C_4220012 Physcomitrella patens estExt_fgenesh1_pg.C_4220012 N 0.870
cassava44009.valid.m1 Manihot esculenta cassava44009.valid.m1 N 0.855
Glyma20g34100.1 Glycine max Glyma20g34100.1 N 0.855
ppa010052m Prunus persica ppa010052m N 0.855
Glyma10g33490.1 Glycine max Glyma10g33490.1 N 0.855
mgf005737m Mimulus guttatus mgf005737m N 0.855
cassava18862.valid.m1 Manihot esculenta cassava18862.valid.m1 N 0.855
Cucsa.093920 Cucumis sativus Cucsa.093920 N 0.855
B9NAP4_POPTR Populus trichocarpa POPTR_0012s11480 N 0.855
30147.m014356 Ricinus communis 30147.m014356 N 0.855
mgf007186m Mimulus guttatus mgf007186m N 0.855
mgf006490m Mimulus guttatus mgf006490m N 0.855
B9ICE3_POPTR Populus trichocarpa POPTR_0015s12230 N 0.841
BRADI3G58600 Brachypodium distachyon BRADI3G58600 N 0.841
XM_002873406.1 Arabidopsis lyrata fgenesh2_kg.6__999__AT5G10350.2 N 0.841
LOC_Os02g52140 Oryza sativa LOC_Os02g52140 N 0.841
GSVIVG00004460001 Vitis vinifera GSVIVG00004460001 N 0.841
estExt_Genewise1.C_4330008 Physcomitrella patens estExt_Genewise1.C_4330008 N 0.841
GRMZM2G108919 Zea mays GRMZM2G108919 N 0.841
mgf023117m Mimulus guttatus mgf023117m N 0.841
BGIOSIBCE008718 Oryza indica BGIOSIBCE008718 N 0.841
estExt_Genewise1.C_30470 Physcomitrella patens estExt_Genewise1.C_30470 N 0.841
e_gw1.26.703.1 Selaginella moellendorfii e_gw1.26.703.1 N 0.841
AT5G10350 Arabidopsis thaliana AT5G10350-TAIR-G N 0.841
POPTR_0007s05150 Populus trichocarpa POPTR_0007s05150 N 0.826
XM_002864051.1 Arabidopsis lyrata scaffold_801545.1 N 0.826
Sb04g027340 Sorghum bicolor Sb04g027340 N 0.826
MDP0000623378 Malus x domestica MDP0000623378 N 0.826
MDP0000562891 Malus x domestica MDP0000562891 N 0.826
Medtr1g087160 Medicago truncatula Medtr1g087160 N 0.826
ATPABN1 Arabidopsis thaliana AT5G51120-TAIR-G N 0.826
MDP0000186271 Malus x domestica MDP0000186271 N 0.826
BRADI1G45640 Brachypodium distachyon BRADI1G45640 N 0.826
LOC_Os06g11620 Oryza sativa LOC_Os06g11620 N 0.826
e_gw1.85.66.1 Physcomitrella patens e_gw1.85.66.1 N 0.812
MDP0000123472 Malus x domestica MDP0000123472 N 0.812
POPTR_0005s07440 Populus trichocarpa POPTR_0005s07440 N 0.812
MDP0000258062 Malus x domestica MDP0000258062 N 0.812
BGIOSIBCE021151 Oryza indica BGIOSIBCE021151 N 0.768
SB01G028780 Sorghum bicolor Sb01g028780 N 0.768
AC220927.3_FG004 Zea mays AC220927.3_FG004 N 0.768
estExt_Genewise1.C_10557 Volvox carteri estExt_Genewise1.C_10557 N 0.739
estExt_Genewise1.C_260068 Coccomyxa C 169 estExt_Genewise1.C_260068 N 0.725
estExt_Genewise1.C_260003 Chlorella vulgaris estExt_Genewise1.C_260003 N 0.725
e_gwW.3.612.1 Chlamydomonas reinhardtii e_gwW.3.612.1 N 0.710