Cucsa.071470 (Cucumis sativus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Cucsa.071470 T49536_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.071470.1 RRM 119 187
Cucsa.071470.1 RRM 217 285
Cucsa.071470.2 RRM 119 187
Cucsa.071470.2 RRM 217 245
Cucsa.071470.3 RRM 119 187

Links

Other RRM family RBPs
Other Cucumis sativus RBPs

31 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009298m Prunus persica ppa009298m N 0.775
PK28889.1 Cannabis sativa PK28889.1 N 0.761
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.761
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.761
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.754
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.746
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.746
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.746
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.746
29650.m000268 Ricinus communis 29650.m000268 N 0.746
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.732
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.732
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.725
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.717
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.717
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.717
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.717
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.710
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.710
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.710
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.710
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.710
SB07G001560 Sorghum bicolor Sb07g001560 N 0.710
30068.m002593 Ricinus communis 30068.m002593 N 0.710
cassava23842.valid.m1 Manihot esculenta cassava23842.valid.m1 N 0.707
chr3.CM0190.20.nd Lotus japonicus chr3.CM0190.20.nd N 0.704
PK04894.1 Cannabis sativa PK04894.1 N 0.703
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.703
mgf013366m Mimulus guttatus mgf013366m N 0.703
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.703
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.703