LOC_Os01g11120 (Oryza sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 LOC_Os01g11120 T44920_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
LOC_Os01g11120.1 RRM 125 192
LOC_Os01g11120.1 RRM 222 290

Links

Other RRM family RBPs
Other Oryza sativa RBPs

71 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
SB03G002180 Sorghum bicolor Sb03g002180 N 0.934
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.934
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.927
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.927
ppa009298m Prunus persica ppa009298m N 0.832
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.818
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.818
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.810
PK28889.1 Cannabis sativa PK28889.1 N 0.810
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.803
PK12463.1 Cannabis sativa PK12463.1 N 0.803
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.803
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.803
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.803
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.803
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.796
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.796
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.796
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.796
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.796
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.796
SB07G001560 Sorghum bicolor Sb07g001560 N 0.796
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.788
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.788
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.788
30068.m002593 Ricinus communis 30068.m002593 N 0.788
29485.m000140 Ricinus communis 29485.m000140 N 0.788
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.788
mgf013366m Mimulus guttatus mgf013366m N 0.781
PK04894.1 Cannabis sativa PK04894.1 N 0.781
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.781
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.781
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.781
mgf012896m Mimulus guttatus mgf012896m N 0.781
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.781
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.781
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.781
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.781
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.781
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.781
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.781
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.781
ppa006808m Prunus persica ppa006808m N 0.774
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.774
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.774
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.774
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.774
29650.m000268 Ricinus communis 29650.m000268 N 0.774
MDP0000233630 Malus x domestica MDP0000233630 N 0.774
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.766
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.766
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.766
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.766
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.766
SB10G021290 Sorghum bicolor Sb10g021290 N 0.766
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.759
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.759
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.759
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.759
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.752
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.752
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.752
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.745
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.745
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.730
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.730
mgf014445m Mimulus guttatus mgf014445m N 0.715
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.715
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.715
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.703
mgf005336m Mimulus guttatus mgf005336m N 0.701