PK28889.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK28889.1 T31797_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
PK28889.1 RRM 109 176
PK28889.1 RRM 206 274

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ppa009298m Prunus persica ppa009298m N 0.934
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.920
29650.m000268 Ricinus communis 29650.m000268 N 0.898
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.898
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.883
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.883
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.861
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.825
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.818
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.818
PK04894.1 Cannabis sativa PK04894.1 N 0.810
30068.m002593 Ricinus communis 30068.m002593 N 0.810
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.810
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.810
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.810
ppa006808m Prunus persica ppa006808m N 0.803
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.803
mgf012896m Mimulus guttatus mgf012896m N 0.803
PK12463.1 Cannabis sativa PK12463.1 N 0.803
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.803
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.796
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.796
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.796
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.796
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.796
29485.m000140 Ricinus communis 29485.m000140 N 0.788
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.788
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.788
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.788
MDP0000233630 Malus x domestica MDP0000233630 N 0.788
SB07G001560 Sorghum bicolor Sb07g001560 N 0.788
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.788
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.788
mgf005336m Mimulus guttatus mgf005336m N 0.781
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.781
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.781
mgf013366m Mimulus guttatus mgf013366m N 0.781
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.781
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.781
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.781
SB10G021290 Sorghum bicolor Sb10g021290 N 0.781
SB03G002180 Sorghum bicolor Sb03g002180 N 0.781
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.781
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.781
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.781
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.781
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.781
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.781
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.781
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.774
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.774
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.774
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.774
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.774
mgf014445m Mimulus guttatus mgf014445m N 0.774
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.774
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.774
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.774
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.766
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.766
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.766
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.766
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.761
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.759
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.752
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.745
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.745
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.745
MDP0000155814 Malus x domestica MDP0000155814 N 0.738
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.737
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.723
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.723
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.701