cassava23841.valid.m1 (Manihot esculenta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 cassava23841.valid.m1 T49206_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
cassava23841.valid.m1 RRM 129 196
cassava23841.valid.m1 RRM 226 294

Links

Other RRM family RBPs
Other Manihot esculenta RBPs

73 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
29650.m000268 Ricinus communis 29650.m000268 N 0.920
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.920
ppa009298m Prunus persica ppa009298m N 0.912
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.898
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.898
PK28889.1 Cannabis sativa PK28889.1 N 0.883
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.861
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.854
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.854
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.832
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.825
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.818
ppa006808m Prunus persica ppa006808m N 0.818
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.818
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.818
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.810
PK04894.1 Cannabis sativa PK04894.1 N 0.810
mgf012896m Mimulus guttatus mgf012896m N 0.810
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.803
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.803
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.803
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 0.803
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.803
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.803
30068.m002593 Ricinus communis 30068.m002593 N 0.803
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.803
29485.m000140 Ricinus communis 29485.m000140 N 0.803
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.803
gw1.29.636.1 Selaginella moellendorfii gw1.29.636.1 N 0.803
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.803
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.803
MDP0000233630 Malus x domestica MDP0000233630 N 0.803
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.803
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.803
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.796
mgf013366m Mimulus guttatus mgf013366m N 0.796
PK12463.1 Cannabis sativa PK12463.1 N 0.796
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.788
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.788
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.788
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.788
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.788
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.788
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.788
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.788
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.781
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.781
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.781
SB07G001560 Sorghum bicolor Sb07g001560 N 0.781
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.781
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.781
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.774
mgf014445m Mimulus guttatus mgf014445m N 0.774
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.766
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.766
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.766
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.766
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.759
mgf005336m Mimulus guttatus mgf005336m N 0.759
SB10G021290 Sorghum bicolor Sb10g021290 N 0.759
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.759
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.759
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.754
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.752
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.752
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.745
MDP0000155814 Malus x domestica MDP0000155814 N 0.738
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.723
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.723
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.708