gw1.29.636.1 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.29.636.1 T53207_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.29.636.1 RRM 88 155
gw1.29.636.1 RRM 185 253

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

78 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.10.957.1 Selaginella moellendorfii gw1.10.957.1 N 1.000
estExt_Genewise1.C_1960042 Physcomitrella patens estExt_Genewise1.C_1960042 N 0.934
e_gw1.62.48.1 Physcomitrella patens e_gw1.62.48.1 N 0.934
GSVIVG00019674001 Vitis vinifera GSVIVG00019674001 N 0.898
GSVIVG00038633001 Vitis vinifera GSVIVG00038633001 N 0.898
PK12463.1 Cannabis sativa PK12463.1 N 0.891
BGIOSIBCE026288 Oryza indica BGIOSIBCE026288 N 0.883
LOC_Os08g02330 Oryza sativa LOC_Os08g02330 N 0.883
ppa006808m Prunus persica ppa006808m N 0.876
cassava43127.valid.m1 Manihot esculenta cassava43127.valid.m1 N 0.876
SB07G001560 Sorghum bicolor Sb07g001560 N 0.869
mgf013366m Mimulus guttatus mgf013366m N 0.869
PK04894.1 Cannabis sativa PK04894.1 N 0.869
GRMZM2G173428 Zea mays GRMZM2G173428 N 0.869
Glyma04g40750.1 Glycine max Glyma04g40750.1 N 0.869
30068.m002593 Ricinus communis 30068.m002593 N 0.869
mgf012896m Mimulus guttatus mgf012896m N 0.869
BRADI3G13740 Brachypodium distachyon BRADI3G13740 N 0.854
GRMZM2G069102 Zea mays GRMZM2G069102 N 0.854
MDP0000233630 Malus x domestica MDP0000233630 N 0.854
Glyma06g14050.1 Glycine max Glyma06g14050.1 N 0.854
Medtr3g122880 Medicago truncatula Medtr3g122880 N 0.854
Glyma06g14030.1 Glycine max Glyma06g14030.1 N 0.854
Glyma04g40760.1 Glycine max Glyma04g40760.1 N 0.847
XM_002893696.1 Arabidopsis lyrata fgenesh2_kg.1__3419__AT1G32790.2 N 0.847
29485.m000140 Ricinus communis 29485.m000140 N 0.847
CID11 Arabidopsis thaliana AT1G32790-TAIR-G N 0.847
cassava38063.valid.m1 Manihot esculenta cassava38063.valid.m1 N 0.839
cassava37979.valid.m1 Manihot esculenta cassava37979.valid.m1 N 0.839
cassava38064.valid.m1 Manihot esculenta cassava38064.valid.m1 N 0.839
cassava38065.valid.m1 Manihot esculenta cassava38065.valid.m1 N 0.839
cassava41363.m1 Manihot esculenta cassava41363.m1 N 0.839
cassava37978.valid.m1 Manihot esculenta cassava37978.valid.m1 N 0.839
cassava41364.m1 Manihot esculenta cassava41364.m1 N 0.839
ATRBP37 Arabidopsis thaliana AT4G10610-TAIR-G N 0.832
XM_002872481.1 Arabidopsis lyrata fgenesh2_kg.6__3042__AT4G10610.1 N 0.825
Cucsa.273320 Cucumis sativus Cucsa.273320 N 0.825
Medtr3g122920 Medicago truncatula Medtr3g122920 N 0.818
GSVIVG00001961001 Vitis vinifera GSVIVG00001961001 N 0.810
cassava23841.valid.m1 Manihot esculenta cassava23841.valid.m1 N 0.803
Glyma08g18810.1 Glycine max Glyma08g18810.1 N 0.803
XM_002882834.1 Arabidopsis lyrata fgenesh2_kg.3__1570__AT3G14450.1 N 0.796
CID9 Arabidopsis thaliana AT3G14450-TAIR-G N 0.796
ppa009298m Prunus persica ppa009298m N 0.796
PK28889.1 Cannabis sativa PK28889.1 N 0.796
Glyma15g40060.1 Glycine max Glyma15g40060.1 N 0.796
LOC_Os01g11120 Oryza sativa LOC_Os01g11120 N 0.796
XM_002877626.1 Arabidopsis lyrata fgenesh2_kg.5__1290__AT3G49390.2 N 0.781
CID10 Arabidopsis thaliana AT3G49390-TAIR-G N 0.781
BRADI2G06650 Brachypodium distachyon BRADI2G06650 N 0.781
GRMZM2G349794 Zea mays GRMZM2G349794 N 0.774
29650.m000268 Ricinus communis 29650.m000268 N 0.766
chr3.CM0059.50.nd Lotus japonicus chr3.CM0059.50.nd N 0.766
BRADI3G09250 Brachypodium distachyon BRADI3G09250 N 0.766
XM_002894411.1 Arabidopsis lyrata Al_scaffold_0001_4812 N 0.759
CID8 Arabidopsis thaliana AT1G53650-TAIR-G N 0.759
BGIOSIBCE006292 Oryza indica BGIOSIBCE006292 N 0.759
LOC_Os02g14760 Oryza sativa LOC_Os02g14760 N 0.759
GRMZM2G051043 Zea mays GRMZM2G051043 N 0.752
PDK_20s1822231g001 Phoenix dactylifera PDK_20s1822231g001 N 0.752
SB03G002180 Sorghum bicolor Sb03g002180 N 0.752
GRMZM2G069816 Zea mays GRMZM2G069816 N 0.745
Sb04g008740 Sorghum bicolor Sb04g008740 N 0.745
mgf014445m Mimulus guttatus mgf014445m N 0.737
BRADI1G39150 Brachypodium distachyon BRADI1G39150 N 0.730
LjT41H24.20.nd Lotus japonicus LjT41H24.20.nd N 0.730
GRMZM2G029058 Zea mays GRMZM2G029058 N 0.730
chr3.LjT02L14.110.nd Lotus japonicus chr3.LjT02L14.110.nd N 0.723
B9GIT2_POPTR Populus trichocarpa POPTR_0001s45290 N 0.723
POPTR_0012s02890 Populus trichocarpa POPTR_0012s02890 N 0.723
B9IDI5_POPTR Populus trichocarpa POPTR_0015s00770 N 0.723
mgf005336m Mimulus guttatus mgf005336m N 0.723
Cucsa.071470 Cucumis sativus Cucsa.071470 N 0.717
LOC_Os06g35030 Oryza sativa LOC_Os06g35030 N 0.715
SB10G021290 Sorghum bicolor Sb10g021290 N 0.715
cassava45236.m1 Manihot esculenta cassava45236.m1 N 0.715
BGIOSIBCE022210 Oryza indica BGIOSIBCE022210 N 0.701
GRMZM2G118590 Zea mays GRMZM2G118590 N 0.701