CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh1_pg.C_220114
(
Monosiga brevicollis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh1_pg.C_220114
T50543_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
sf3b4
M195_0.6
Danio rerio
CAAAAG
RNAcompete
Ray et al.(2013)
RNCMPT00224
0.750
Smp_067420
M201_0.6
Schistosoma mansoni
DWWUUUU
RNAcompete
Ray et al.(2013)
RNCMPT00232
0.741
sap-49
M261_0.6
Caenorhabditis elegans
CGUGUGAG
SELEX
Cook et al.(2011)
145_9163526
0.706
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh1_pg.C_220114
RRM
15
85
VYVGGLDDKVDEELVWELFLQAGPVVSVHMPKDRVSGAHQSYGFVEFLGEDDAEYALKILNMINVYGKPIR
estExt_fgenesh1_pg.C_220114
RRM
102
173
LYIGNLAPEVDEKLLFDTFSAFGVILQHPKVMRDLETGHSKGFAFINYATFEASDAAIKAMHQQYLCNRPIN
Links
Other
RRM
family RBPs
Other
Monosiga brevicollis
RBPs
86 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PTSG_00878
Salpingoeca rosetta
PTSG_00878
I
0.825
estExt_Genewise1.C_sca_2060028
Lottia gigantea
estExt_Genewise1.C_sca_2060028
I
0.783
CpipJ_CPIJ014149
Culex pipiens
CpipJ_CPIJ014149
I
0.776
CPIJ014149
Culex quinquefasciatus
CPIJ014149
I
0.776
AAEL013795
Aedes aegypti
AAEL013795
I
0.776
AAH77458
Xenopus laevis
AAH77458
I
0.769
AGAP001538
Anopheles gambiae
AGAP001538
I
0.769
AAH45264
Xenopus laevis
AAH45264
I
0.769
SF3B4
Otolemur garnettii
ENSOGAG00000006265
I
0.762
Sf3b4
Mus musculus
ENSMUSG00000068856
I
0.762
ENSOCUG00000004614
Oryctolagus cuniculus
ENSOCUG00000004614
I
0.762
SF3B4
Macaca mulatta
ENSMMUG00000007256
I
0.762
estExt_fgenesh2_pm.C_9540001
Branchiostoma floridae
estExt_fgenesh2_pm.C_9540001
I
0.762
SF3B4
Gallus gallus
ENSGALG00000013352
I
0.762
SF3B4
Gasterosteus aculeatus
ENSGACG00000003819
I
0.762
ENSLAFG00000008531
Loxodonta africana
ENSLAFG00000008531
I
0.762
ENSMGAG00000000653
Meleagris gallopavo
ENSMGAG00000000653
I
0.762
ENSOPRG00000010808
Ochotona princeps
ENSOPRG00000010808
I
0.762
ENSMLUG00000010789
Myotis lucifugus
ENSMLUG00000010789
I
0.762
SF3B4
Microcebus murinus
ENSMICG00000000296
I
0.762
ENSMODG00000018767
Monodelphis domestica
ENSMODG00000018767
I
0.762
ENSPVAG00000014171
Pteropus vampyrus
ENSPVAG00000014171
I
0.762
ENSVPAG00000008152
Vicugna pacos
ENSVPAG00000008152
I
0.762
ENSTTRG00000005217
Tursiops truncatus
ENSTTRG00000005217
I
0.762
SF3B4
Tarsius syrichta
ENSTSYG00000009295
I
0.762
sf3b4
Xenopus tropicalis
ENSXETG00000011038
I
0.762
GH17589
Drosophila grimshawi
FBgn0125059
I
0.762
GJ15655
Drosophila virilis
FBgn0202845
I
0.762
GI16317
Drosophila mojavensis
FBgn0139065
I
0.762
SF3B4
Takifugu rubripes
ENSTRUG00000004516
I
0.762
SF3B4
Tetraodon nigroviridis
ENSTNIG00000009156
I
0.762
GK19717
Drosophila willistoni
FBgn0221715
I
0.762
SF3B4
Pan troglodytes
ENSPTRG00000001243
I
0.762
SF3B4
Homo sapiens
ENSG00000143368
I
0.762
Sf3b4
Rattus norvegicus
ENSRNOG00000021181
I
0.762
SF3B4
Taeniopygia guttata
ENSTGUG00000004470
I
0.762
ENSSSCG00000006665
Sus scrofa
ENSSSCG00000006665
I
0.762
SF3B4
Oryzias latipes
ENSORLG00000003062
I
0.762
SF3B4
Gorilla gorilla
ENSGGOG00000004761
I
0.762
amel4_ncbi_hmm1889
Apis mellifera
amel4_ncbi_hmm1889
I
0.762
ENSACAG00000010019
Anolis carolinensis
ENSACAG00000010019
I
0.762
estExt_gwp.C_590193
Nematostella vectensis
estExt_gwp.C_590193
I
0.762
ENSFCAG00000010106
Felis catus
ENSFCAG00000010106
I
0.762
Ame_R019118
Ailuropoda melanoleuca
Ame_R019118
I
0.762
fgenesh2_pg.scaffold_36000101
Branchiostoma floridae
fgenesh2_pg.scaffold_36000101
I
0.762
Q3MHE6_BOVIN
Bos taurus
ENSBTAG00000012495
I
0.762
nasonia_NCBI_hmm192414
Nasonia vitripennis
nasonia_NCBI_hmm192414
I
0.762
ENSCPOG00000008267
Cavia porcellus
ENSCPOG00000008267
I
0.762
A6MKC5_CALJA
Callithrix jacchus
ENSCJAG00000000793
I
0.762
ENSCAFG00000011617
Canis familiaris
ENSCAFG00000011617
I
0.762
sf3b4
Danio rerio
ENSDARG00000018574
D
0.762
LOC100054350
Equus caballus
ENSECAG00000024737
I
0.762
GL21313
Drosophila persimilis
FBgn0158906
I
0.755
GF20385
Drosophila ananassae
FBgn0097392
I
0.755
GA17684-RA
Drosophila pseudoobscura
FBgn0077694
I
0.755
estExt_Genewise1.C_230076
Capitella teleta
estExt_Genewise1.C_230076
I
0.755
GG19577
Drosophila erecta
FBgn0111779
I
0.755
GE16738
Drosophila yakuba
FBgn0234234
I
0.755
ENSPCAG00000000392
Procavia capensis
ENSPCAG00000000392
I
0.755
ISCW010601
Ixodes scapularis
ISCW010601
I
0.755
e_gw1.6.938.1
Trichoplax adhaerens
e_gw1.6.938.1
I
0.755
PHUM263440
Pediculus humanus
PHUM263440
I
0.755
e_gw1.1.857.1
Daphnia pulex
e_gw1.1.857.1
I
0.748
DGIL_AUG5s13542g6t1
Acyrtosiphon pisum
DGIL_AUG5s13542g6t1
I
0.748
GM12470
Drosophila sechellia
FBgn0167407
I
0.748
ENSBTAG00000012793
Bos taurus
ENSBTAG00000012793
I
0.748
Spx
Drosophila melanogaster
FBgn0015818
I
0.748
SNAPOd2T00022637001
Oikopleura dioica
SNAPOd2T00022637001
I
0.741
XP_002157695.1
Hydra magnipapillata
XP_002157695.1
I
0.741
XP_784135.2
Strongylocentrotus purpuratus
XP_784135.2
I
0.741
Smp_067420
Schistosoma mansoni
Smp_067420
D
0.741
XP_001185838.1
Strongylocentrotus purpuratus
XP_001185838.1
I
0.741
ENSSTOG00000006570
Spermophilus tridecemlineatus
ENSSTOG00000006570
I
0.731
ENSCAFG00000005753
Canis familiaris
ENSCAFG00000005753
I
0.727
99199
Helobdella robusta
99199
I
0.727
WUBG_01785
Wuchereria bancrofti
WUBG_01785
I
0.713
estExt_Genemark1.C_60101
Coccomyxa C 169
estExt_Genemark1.C_60101
I
0.713
LOAG_01189
Loa loa
LOAG_01189
I
0.713
estExt_Genewise1.C_60440
Chlorella vulgaris
estExt_Genewise1.C_60440
I
0.713
FER_chlre3.3.376.1.5
Chlamydomonas reinhardtii
FER_chlre3.3.376.1.5
I
0.713
Bm1_43460
Brugia malayi
Bm1_43460
I
0.713
ENSMEUG00000003272
Macropus eugenii
ENSMEUG00000003272
I
0.706
B9HEU6_POPTR
Populus trichocarpa
POPTR_0007s12570
I
0.706
sap-49
Caenorhabditis elegans
C08B11.5
D
0.706
CBN06124
Caenorhabditis brenneri
CBN06124
I
0.706
CRE01639
Caenorhabditis remanei
CRE01639
I
0.706