estExt_fgenesh1_pg.C_220114 (Monosiga brevicollis)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_220114 T50543_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.750
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.741
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.706
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_220114 RRM 15 85
estExt_fgenesh1_pg.C_220114 RRM 102 173

Links

Other RRM family RBPs
Other Monosiga brevicollis RBPs

86 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.825
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.783
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.776
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.776
AAEL013795 Aedes aegypti AAEL013795 I 0.776
AAH77458 Xenopus laevis AAH77458 I 0.769
AGAP001538 Anopheles gambiae AGAP001538 I 0.769
AAH45264 Xenopus laevis AAH45264 I 0.769
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.762
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.762
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.762
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.762
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.762
SF3B4 Gallus gallus ENSGALG00000013352 I 0.762
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.762
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.762
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.762
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.762
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.762
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.762
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.762
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.762
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.762
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.762
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.762
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.762
GH17589 Drosophila grimshawi FBgn0125059 I 0.762
GJ15655 Drosophila virilis FBgn0202845 I 0.762
GI16317 Drosophila mojavensis FBgn0139065 I 0.762
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.762
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.762
GK19717 Drosophila willistoni FBgn0221715 I 0.762
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.762
SF3B4 Homo sapiens ENSG00000143368 I 0.762
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.762
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.762
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.762
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.762
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.762
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.762
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.762
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.762
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.762
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.762
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.762
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.762
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.762
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.762
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.762
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.762
sf3b4 Danio rerio ENSDARG00000018574 D 0.762
LOC100054350 Equus caballus ENSECAG00000024737 I 0.762
GL21313 Drosophila persimilis FBgn0158906 I 0.755
GF20385 Drosophila ananassae FBgn0097392 I 0.755
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.755
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.755
GG19577 Drosophila erecta FBgn0111779 I 0.755
GE16738 Drosophila yakuba FBgn0234234 I 0.755
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.755
ISCW010601 Ixodes scapularis ISCW010601 I 0.755
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.755
PHUM263440 Pediculus humanus PHUM263440 I 0.755
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.748
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.748
GM12470 Drosophila sechellia FBgn0167407 I 0.748
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.748
Spx Drosophila melanogaster FBgn0015818 I 0.748
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.741
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.741
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.741
Smp_067420 Schistosoma mansoni Smp_067420 D 0.741
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.741
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.731
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.727
99199 Helobdella robusta 99199 I 0.727
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.713
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.713
LOAG_01189 Loa loa LOAG_01189 I 0.713
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.713
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.713
Bm1_43460 Brugia malayi Bm1_43460 I 0.713
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.706
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.706
sap-49 Caenorhabditis elegans C08B11.5 D 0.706
CBN06124 Caenorhabditis brenneri CBN06124 I 0.706
CRE01639 Caenorhabditis remanei CRE01639 I 0.706