99199 (Helobdella robusta)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 99199 T48916_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
Smp_067420
M201_0.6 		Schistosoma mansoni DWWUUUU RNAcompete
Ray et al.(2013)
RNCMPT00232 		0.867
sf3b4
M195_0.6 		Danio rerio CAAAAG RNAcompete
Ray et al.(2013)
RNCMPT00224 		0.833
sap-49
M261_0.6 		Caenorhabditis elegans CGUGUGAG SELEX
Cook et al.(2011)
145_9163526 		0.804
estExt_gwp_gw1.C_700168
M205_0.6 		Physcomitrella patens WUGGAG RNAcompete
Ray et al.(2013)
RNCMPT00237 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
99199 RRM 15 85
99199 RRM 102 173

Links

Other RRM family RBPs
Other Helobdella robusta RBPs

118 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ISCW010601 Ixodes scapularis ISCW010601 I 0.881
nasonia_NCBI_hmm192414 Nasonia vitripennis nasonia_NCBI_hmm192414 I 0.874
estExt_Genewise1.C_230076 Capitella teleta estExt_Genewise1.C_230076 I 0.874
estExt_gwp.C_590193 Nematostella vectensis estExt_gwp.C_590193 I 0.874
amel4_ncbi_hmm1889 Apis mellifera amel4_ncbi_hmm1889 I 0.874
estExt_Genewise1.C_sca_2060028 Lottia gigantea estExt_Genewise1.C_sca_2060028 I 0.867
e_gw1.1.857.1 Daphnia pulex e_gw1.1.857.1 I 0.867
DGIL_AUG5s13542g6t1 Acyrtosiphon pisum DGIL_AUG5s13542g6t1 I 0.867
Smp_067420 Schistosoma mansoni Smp_067420 D 0.867
CPIJ014149 Culex quinquefasciatus CPIJ014149 I 0.860
CpipJ_CPIJ014149 Culex pipiens CpipJ_CPIJ014149 I 0.860
AGAP001538 Anopheles gambiae AGAP001538 I 0.860
AAEL013795 Aedes aegypti AAEL013795 I 0.860
SNAPOd2T00022637001 Oikopleura dioica SNAPOd2T00022637001 I 0.860
PHUM263440 Pediculus humanus PHUM263440 I 0.860
e_gw1.6.938.1 Trichoplax adhaerens e_gw1.6.938.1 I 0.860
AAH45264 Xenopus laevis AAH45264 I 0.853
AAH77458 Xenopus laevis AAH77458 I 0.853
estExt_fgenesh2_pm.C_9540001 Branchiostoma floridae estExt_fgenesh2_pm.C_9540001 I 0.853
fgenesh2_pg.scaffold_36000101 Branchiostoma floridae fgenesh2_pg.scaffold_36000101 I 0.853
ENSOCUG00000004614 Oryctolagus cuniculus ENSOCUG00000004614 I 0.846
ENSACAG00000010019 Anolis carolinensis ENSACAG00000010019 I 0.846
SF3B4 Oryzias latipes ENSORLG00000003062 I 0.846
Q3MHE6_BOVIN Bos taurus ENSBTAG00000012495 I 0.846
ENSOPRG00000010808 Ochotona princeps ENSOPRG00000010808 I 0.846
SF3B4 Otolemur garnettii ENSOGAG00000006265 I 0.846
LOC100054350 Equus caballus ENSECAG00000024737 I 0.846
ENSLAFG00000008531 Loxodonta africana ENSLAFG00000008531 I 0.846
SF3B4 Gorilla gorilla ENSGGOG00000004761 I 0.846
SF3B4 Gallus gallus ENSGALG00000013352 I 0.846
ENSMODG00000018767 Monodelphis domestica ENSMODG00000018767 I 0.846
ENSMGAG00000000653 Meleagris gallopavo ENSMGAG00000000653 I 0.846
ENSMLUG00000010789 Myotis lucifugus ENSMLUG00000010789 I 0.846
SF3B4 Microcebus murinus ENSMICG00000000296 I 0.846
SF3B4 Gasterosteus aculeatus ENSGACG00000003819 I 0.846
SF3B4 Homo sapiens ENSG00000143368 I 0.846
A6MKC5_CALJA Callithrix jacchus ENSCJAG00000000793 I 0.846
ENSCAFG00000011617 Canis familiaris ENSCAFG00000011617 I 0.846
ENSCPOG00000008267 Cavia porcellus ENSCPOG00000008267 I 0.846
sf3b4 Danio rerio ENSDARG00000018574 D 0.846
ENSFCAG00000010106 Felis catus ENSFCAG00000010106 I 0.846
SF3B4 Pan troglodytes ENSPTRG00000001243 I 0.846
Sf3b4 Mus musculus ENSMUSG00000068856 I 0.846
ENSSSCG00000006665 Sus scrofa ENSSSCG00000006665 I 0.846
SF3B4 Takifugu rubripes ENSTRUG00000004516 I 0.846
SF3B4 Tetraodon nigroviridis ENSTNIG00000009156 I 0.846
SF3B4 Taeniopygia guttata ENSTGUG00000004470 I 0.846
ENSTTRG00000005217 Tursiops truncatus ENSTTRG00000005217 I 0.846
ENSVPAG00000008152 Vicugna pacos ENSVPAG00000008152 I 0.846
Ame_R019118 Ailuropoda melanoleuca Ame_R019118 I 0.846
sf3b4 Xenopus tropicalis ENSXETG00000011038 I 0.846
XP_001185838.1 Strongylocentrotus purpuratus XP_001185838.1 I 0.846
SF3B4 Tarsius syrichta ENSTSYG00000009295 I 0.846
Sf3b4 Rattus norvegicus ENSRNOG00000021181 I 0.846
ENSPVAG00000014171 Pteropus vampyrus ENSPVAG00000014171 I 0.846
XP_784135.2 Strongylocentrotus purpuratus XP_784135.2 I 0.846
SF3B4 Macaca mulatta ENSMMUG00000007256 I 0.846
ENSPCAG00000000392 Procavia capensis ENSPCAG00000000392 I 0.839
Aqu1.214461 Amphimedon queenslandica Aqu1.214461 I 0.832
Aqu1.212443 Amphimedon queenslandica Aqu1.212443 I 0.832
GH17589 Drosophila grimshawi FBgn0125059 I 0.825
GA17684-RA Drosophila pseudoobscura FBgn0077694 I 0.825
GI16317 Drosophila mojavensis FBgn0139065 I 0.825
GL21313 Drosophila persimilis FBgn0158906 I 0.825
ENSBTAG00000012793 Bos taurus ENSBTAG00000012793 I 0.825
GJ15655 Drosophila virilis FBgn0202845 I 0.825
GG19577 Drosophila erecta FBgn0111779 I 0.818
GF20385 Drosophila ananassae FBgn0097392 I 0.818
GK19717 Drosophila willistoni FBgn0221715 I 0.818
WUBG_01785 Wuchereria bancrofti WUBG_01785 I 0.818
LOAG_01189 Loa loa LOAG_01189 I 0.818
GE16738 Drosophila yakuba FBgn0234234 I 0.818
ENSSTOG00000006570 Spermophilus tridecemlineatus ENSSTOG00000006570 I 0.814
Spx Drosophila melanogaster FBgn0015818 I 0.811
Bm1_43460 Brugia malayi Bm1_43460 I 0.811
GM12470 Drosophila sechellia FBgn0167407 I 0.811
CBN06124 Caenorhabditis brenneri CBN06124 I 0.804
sap-49 Caenorhabditis elegans C08B11.5 D 0.804
CRE01639 Caenorhabditis remanei CRE01639 I 0.797
Minc01580 Meloidogyne incognita Minc01580 I 0.790
Minc02568 Meloidogyne incognita Minc02568 I 0.790
ENSMEUG00000003272 Macropus eugenii ENSMEUG00000003272 I 0.790
CJA19238 Caenorhabditis japonica CJA19238 I 0.790
ENSCAFG00000005753 Canis familiaris ENSCAFG00000005753 I 0.790
Minc12926 Meloidogyne incognita Minc12926 I 0.790
XP_002157695.1 Hydra magnipapillata XP_002157695.1 I 0.783
CBG13349 Caenorhabditis briggsae CBG13349 I 0.783
PTSG_00878 Salpingoeca rosetta PTSG_00878 I 0.776
30183.m001303 Ricinus communis 30183.m001303 I 0.776
cassava31033.valid.m1 Manihot esculenta cassava31033.valid.m1 I 0.762
PK08238.1 Cannabis sativa PK08238.1 I 0.762
MDP0000131129 Malus x domestica MDP0000131129 I 0.755
GSVIVG00018991001 Vitis vinifera GSVIVG00018991001 I 0.755
estExt_gwp_gw1.C_700168 Physcomitrella patens estExt_gwp_gw1.C_700168 D 0.755
Cucsa.251850 Cucumis sativus Cucsa.251850 I 0.755
MDP0000320945 Malus x domestica MDP0000320945 I 0.755
Medtr3g087340 Medicago truncatula Medtr3g087340 I 0.748
B9HEU6_POPTR Populus trichocarpa POPTR_0007s12570 I 0.748
SPPG_04182 Spizellomyces punctatus SPPG_04182 I 0.748
Glyma09g00310.1 Glycine max Glyma09g00310.1 I 0.748
FER_chlre3.3.376.1.5 Chlamydomonas reinhardtii FER_chlre3.3.376.1.5 I 0.748
Glyma12g36950.1 Glycine max Glyma12g36950.1 I 0.741
ppa007508m Prunus persica ppa007508m I 0.741
estExt_Genewise1.C_60440 Chlorella vulgaris estExt_Genewise1.C_60440 I 0.734
estExt_Genemark1.C_60101 Coccomyxa C 169 estExt_Genemark1.C_60101 I 0.734
SB01G020190 Sorghum bicolor Sb01g020190 I 0.727
e_gw1.3.432.1 Micromonas pusilla e_gw1.3.432.1 I 0.727
BGIOSIBCE032328 Oryza indica BGIOSIBCE032328 I 0.727
LOC_Os10g31900 Oryza sativa LOC_Os10g31900 I 0.727
BRADI3G27920 Brachypodium distachyon BRADI3G27920 I 0.727
GRMZM2G170699 Zea mays GRMZM2G170699 I 0.727
estExt_fgenesh1_pg.C_220114 Monosiga brevicollis estExt_fgenesh1_pg.C_220114 I 0.727
emb2444 Arabidopsis thaliana AT2G18510-TAIR-G I 0.720
gw1.05.00.253.1 Ostreococcus tauri gw1.05.00.253.1 I 0.720
GRMZM2G102639 Zea mays GRMZM2G102639 I 0.720
e_gwEuk.5.259.1 Ostreococcus lucimarinus e_gwEuk.5.259.1 I 0.713
XM_002886132.1 Arabidopsis lyrata fgenesh2_kg.3__3460__AT2G18510.1 I 0.713
CAOG_06059 Capsaspora owczarzaki CAOG_06059 I 0.706