estExt_fgenesh1_pg.C_3900014 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_fgenesh1_pg.C_3900014 T50583_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_3900014 RRM 93 162

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

51 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.929
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.900
fgenesh1_pm.scaffold_57000010 Physcomitrella patens fgenesh1_pm.scaffold_57000010 N 0.886
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.871
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.871
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.871
29876.m000260 Ricinus communis 29876.m000260 N 0.857
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.857
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.843
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.843
ppa010358m Prunus persica ppa010358m N 0.843
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.843
SB01G039330 Sorghum bicolor Sb01g039330 N 0.843
mgf010207m Mimulus guttatus mgf010207m N 0.843
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.843
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.843
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.843
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.843
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.843
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.829
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.829
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.829
MDP0000119945 Malus x domestica MDP0000119945 N 0.814
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.814
MDP0000153894 Malus x domestica MDP0000153894 N 0.814
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.814
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.814
MDP0000251188 Malus x domestica MDP0000251188 N 0.814
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.800
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.800
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.800
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.786
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.786
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.786
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.771
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.771
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.771
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.771
LjT41B11.50.nd Lotus japonicus LjT41B11.50.nd N 0.743
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.743
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.743
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.743
MDP0000320467 Malus x domestica MDP0000320467 N 0.714
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.714
SB07G020860 Sorghum bicolor Sb07g020860 N 0.714
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.700
SB02G007020 Sorghum bicolor Sb02g007020 N 0.700
29585.m000588 Ricinus communis 29585.m000588 N 0.700
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.700
GRMZM2G019251 Zea mays GRMZM2G019251 N 0.700
mgf000319m Mimulus guttatus mgf000319m N 0.700