fgenesh1_pm.scaffold_57000010 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.scaffold_57000010 T52111_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.scaffold_57000010 RRM 104 173

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

45 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
e_gw1.4.224.1 Physcomitrella patens e_gw1.4.224.1 N 0.957
e_gw1.77.52.1 Physcomitrella patens e_gw1.77.52.1 N 0.914
estExt_fgenesh1_pg.C_3900014 Physcomitrella patens estExt_fgenesh1_pg.C_3900014 N 0.886
GSVIVG00025009001 Vitis vinifera GSVIVG00025009001 N 0.843
cassava35480.valid.m1 Manihot esculenta cassava35480.valid.m1 N 0.843
ppa010358m Prunus persica ppa010358m N 0.829
cassava37747.valid.m1 Manihot esculenta cassava37747.valid.m1 N 0.829
SB01G039330 Sorghum bicolor Sb01g039330 N 0.829
LOC_Os12g01010 Oryza sativa LOC_Os12g01010 N 0.829
Medtr4g078540 Medicago truncatula Medtr4g078540 N 0.829
Glyma12g07010.1 Glycine max Glyma12g07010.1 N 0.829
GRMZM2G157329 Zea mays GRMZM2G157329 N 0.829
cassava37746.valid.m1 Manihot esculenta cassava37746.valid.m1 N 0.829
Glyma13g40930.1 Glycine max Glyma13g40930.1 N 0.814
29876.m000260 Ricinus communis 29876.m000260 N 0.814
mgf010207m Mimulus guttatus mgf010207m N 0.814
Glyma11g15040.1 Glycine max Glyma11g15040.1 N 0.814
GRMZM2G166780 Zea mays GRMZM2G166780 N 0.814
B9GER3_POPTR Populus trichocarpa POPTR_0001s24350 N 0.800
XM_002873013.1 Arabidopsis lyrata fgenesh2_kg.6__165__AT5G02530.1 N 0.800
LOC_Os11g01020 Oryza sativa LOC_Os11g01020 N 0.800
BGIOSIBCE007269 Oryza indica BGIOSIBCE007269 N 0.800
BRADI4G45380 Brachypodium distachyon BRADI4G45380 N 0.800
AT5G02530 Arabidopsis thaliana AT5G02530-TAIR-G N 0.800
BGIOSIBCE007271 Oryza indica BGIOSIBCE007271 N 0.800
MDP0000153894 Malus x domestica MDP0000153894 N 0.786
MDP0000251188 Malus x domestica MDP0000251188 N 0.786
Cucsa.213420 Cucumis sativus Cucsa.213420 N 0.786
Cucsa.172290 Cucumis sativus Cucsa.172290 N 0.786
MDP0000119945 Malus x domestica MDP0000119945 N 0.786
B9NB27_POPTR Populus trichocarpa POPTR_0016s11470 N 0.771
BGIOSIBCE010579 Oryza indica BGIOSIBCE010579 N 0.771
e_gw1.0.323.1 Selaginella moellendorfii e_gw1.0.323.1 N 0.771
LOC_Os03g17010 Oryza sativa LOC_Os03g17010 N 0.771
cassava6599.valid.m1 Manihot esculenta cassava6599.valid.m1 N 0.757
BRADI1G66430 Brachypodium distachyon BRADI1G66430 N 0.757
B9HTL2_POPTR Populus trichocarpa POPTR_0010s21510 N 0.757
gw1.1.189.1 Selaginella moellendorfii gw1.1.189.1 N 0.743
GSVIVG00016588001 Vitis vinifera GSVIVG00016588001 N 0.743
XM_002864614.1 Arabidopsis lyrata fgenesh2_kg.8__1946__AT5G59950.1 N 0.714
SB07G020860 Sorghum bicolor Sb07g020860 N 0.714
GRMZM2G171921 Zea mays GRMZM2G171921 N 0.714
AT5G59950 Arabidopsis thaliana AT5G59950-TAIR-G N 0.714
BGIOSIBCE027930 Oryza indica BGIOSIBCE027930 N 0.700
LOC_Os08g33120 Oryza sativa LOC_Os08g33120 N 0.700