fgenesh1_pg.C_scaffold_1000369 (Trichoderma virens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pg.C_scaffold_1000369 T51781_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000369 RRM 237 302

Links

Other RRM family RBPs
Other Trichoderma virens RBPs

27 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
fgenesh5_pg.C_scaffold_6000164 Trichoderma reesei fgenesh5_pg.C_scaffold_6000164 N 0.970
GLRG_02677 Colletotrichum graminicola GLRG_02677 N 0.924
estExt_Genewise1Plus.C_22014 Trichoderma atroviride estExt_Genewise1Plus.C_22014 N 0.909
FOXG_15630 Fusarium oxysporum FOXG_15630 N 0.909
VDAG_01644 Verticillium dahliae VDAG_01644 N 0.894
FGSG_12577 Fusarium graminearum FGSG_12577 N 0.894
CHGG_06140 Chaetomium globosum CHGG_06140 N 0.879
FVEG_13092 Fusarium verticillioides FVEG_13092 N 0.879
fgenesh2_pm.1_#_1388 Thielavia terrestris fgenesh2_pm.1_#_1388 N 0.848
MGG_10567 Magnaporthe oryzae MGG_10567 N 0.848
NCU03007 Neurospora crassa NCU03007 N 0.833
estExt_fgenesh2_pg.C_70098 Neurospora discreta estExt_fgenesh2_pg.C_70098 N 0.833
fgenesh1_pg.C_scaffold_45000041 Neurospora tetrasperma fgenesh1_pg.C_scaffold_45000041 N 0.833
estExt_fgenesh1_pg.C_50213 Cryphonectria parasitica estExt_fgenesh1_pg.C_50213 N 0.818
estExt_fgenesh1_pm.C_sca_54_chr3_4_00013 Nectria haematococca estExt_fgenesh1_pm.C_sca_54_chr3_4_00013 N 0.791
fgenesh1_kg.2_#_606_#_2320_1_CCWO_CCWP_EXTA Myceliophthora thermophila fgenesh1_kg.2_#_606_#_2320_1_CCWO_CCWP_EXTA N 0.761
BC1G_07906 Botrytis cinerea BC1G_07906 N 0.758
SS1G_03468 Sclerotinia sclerotiorum SS1G_03468 N 0.758
UREG_02520 Uncinocarpus reesii UREG_02520 N 0.742
MCYG_02745 Microsporum canis MCYG_02745 N 0.727
CIMG_08445 Coccidioides immitis CIMG_08445 N 0.727
PABG_03629 Paracoccidioides brasiliensis PABG_03629 N 0.727
CPSG_08272 Coccidioides posadasii CPSG_08272 N 0.727
Pa_1_15820 Podospora anserina Pa_1_15820 N 0.716
BDBG_08699 Blastomyces dermatitidis BDBG_08699 N 0.712
ACLA_054770 Aspergillus clavatus CADACLAG00005233 N 0.712
MGYG_08476 Microsporum gypseum MGYG_08476 N 0.712