CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PABG_03629
(
Paracoccidioides brasiliensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PABG_03629
T29943_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PABG_03629T0
RRM
257
322
LFITGVEDDLPEHAIRSFFTEFGTLRSLICSHRSHCAFVNYASREAAEKAAAHCQGKAVIQGCPLR
Links
Other
RRM
family RBPs
Other
Paracoccidioides brasiliensis
RBPs
31 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BDBG_08699
Blastomyces dermatitidis
BDBG_08699
N
0.939
HCAG_07565
Histoplasma capsulatum
HCAG_07565
N
0.939
CIMG_08445
Coccidioides immitis
CIMG_08445
N
0.909
CPSG_08272
Coccidioides posadasii
CPSG_08272
N
0.894
UREG_02520
Uncinocarpus reesii
UREG_02520
N
0.879
ACLA_054770
Aspergillus clavatus
CADACLAG00005233
N
0.848
TESG_01774
Trichophyton tonsurans
TESG_01774
N
0.848
TEQG_04110
Trichophyton equinum
TEQG_04110
N
0.848
MGYG_08476
Microsporum gypseum
MGYG_08476
N
0.833
Pc12g14830
Penicillium chrysogenum
Pc12g14830
N
0.833
MCYG_02745
Microsporum canis
MCYG_02745
N
0.833
ATEG_02173
Aspergillus terreus
CADATEAG00000030
N
0.818
TERG_05432
Trichophyton rubrum
TERG_05432
N
0.818
TRV_06346
Trichophyton verrucosum
TRV_06346
N
0.818
ARB_05996
Arthroderma benhamiae
ARB_05996
N
0.818
ANIA_07145
Aspergillus nidulans
CADANIAG00000312
N
0.803
NFIA_029780
Neosartorya fischeri
CADNFIAG00002898
N
0.788
AFUA_4G03640
Aspergillus fumigatus
CADAFUAG00001443
N
0.788
PMAA_006050
Penicillium marneffei
PMAA_006050
N
0.773
An14g01580
Aspergillus niger
CADANGAG00011093
N
0.773
AFLA_041240
Aspergillus flavus
CADAFLAG00005451
N
0.758
fgenesh1_pg.00795_#_104
Aspergillus carbonarius
fgenesh1_pg.00795_#_104
N
0.758
AO090011000290
Aspergillus oryzae
CADAORAG00005058
N
0.758
fgenesh5_pg.C_scaffold_6000164
Trichoderma reesei
fgenesh5_pg.C_scaffold_6000164
N
0.758
e_gw1.8.691.1
Mycosphaerella fijiensis
e_gw1.8.691.1
N
0.742
VDAG_01644
Verticillium dahliae
VDAG_01644
N
0.727
BC1G_07906
Botrytis cinerea
BC1G_07906
N
0.727
fgenesh1_pg.C_scaffold_1000369
Trichoderma virens
fgenesh1_pg.C_scaffold_1000369
N
0.727
SS1G_03468
Sclerotinia sclerotiorum
SS1G_03468
N
0.727
GLRG_02677
Colletotrichum graminicola
GLRG_02677
N
0.712
estExt_Genewise1.C_50279
Cochliobolus heterostrophus C5
estExt_Genewise1.C_50279
N
0.712