fgenesh2_pg.C_scaffold_39000056 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh2_pg.C_scaffold_39000056 T52193_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.774
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.C_scaffold_39000056 RRM 22 92
fgenesh2_pg.C_scaffold_39000056 RRM 115 186
fgenesh2_pg.C_scaffold_39000056 RRM 228 292

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

12 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.774
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.774
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.774
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.750
MDP0000276227 Malus x domestica MDP0000276227 I 0.740
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.736
PK28027.1 Cannabis sativa PK28027.1 I 0.726
ppa005940m Prunus persica ppa005940m I 0.716
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.716
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.707
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.707
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.702