B9HNV7_POPTR (Populus trichocarpa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 POPTR_0009s05920 T45576_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.750
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0009s05920.1 RRM 22 92
POPTR_0009s05920.1 RRM 115 186
POPTR_0009s05920.1 RRM 232 296

Links

Other RRM family RBPs
Other Populus trichocarpa RBPs

30 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.918
30169.m006434 Ricinus communis 30169.m006434 I 0.909
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.904
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.880
PK28027.1 Cannabis sativa PK28027.1 I 0.870
ppa005940m Prunus persica ppa005940m I 0.841
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.837
MDP0000276227 Malus x domestica MDP0000276227 I 0.832
SB01G045570 Sorghum bicolor Sb01g045570 I 0.822
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.817
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.812
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.812
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.808
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.808
mgf023806m Mimulus guttatus mgf023806m I 0.793
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.793
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.788
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.788
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.750
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.750
MDP0000123012 Malus x domestica MDP0000123012 N 0.745
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.740
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.740
MDP0000123414 Malus x domestica MDP0000123414 N 0.736
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.726
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.707
PK00840.1 Cannabis sativa PK00840.1 I 0.702
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.702
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.702
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.702