PK28027.1 (Cannabis sativa)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PK28027.1 T31787_0.6 Cannabis sativa genome (2012-Feb-20)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.755
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
PK28027.1 RRM 26 96
PK28027.1 RRM 119 190
PK28027.1 RRM 237 301

Links

Other RRM family RBPs
Other Cannabis sativa RBPs

26 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.942
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.909
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.899
MDP0000276227 Malus x domestica MDP0000276227 I 0.885
ppa005940m Prunus persica ppa005940m I 0.875
30169.m006434 Ricinus communis 30169.m006434 I 0.875
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.870
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.865
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.861
SB01G045570 Sorghum bicolor Sb01g045570 I 0.808
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.803
mgf023806m Mimulus guttatus mgf023806m I 0.803
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.798
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.798
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.798
MDP0000123012 Malus x domestica MDP0000123012 N 0.784
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.779
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.774
MDP0000123414 Malus x domestica MDP0000123414 N 0.774
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.769
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.755
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.755
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.745
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.745
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.726
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.716