gw1.339.2.1 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 gw1.339.2.1 T53239_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		1.000
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
gw1.339.2.1 RRM 10 79
gw1.339.2.1 RRM 103 174
gw1.339.2.1 RRM 227 291

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

79 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 1.000
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.990
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.797
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.784
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.774
SB01G045570 Sorghum bicolor Sb01g045570 I 0.769
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.764
MDP0000276227 Malus x domestica MDP0000276227 I 0.764
30169.m006434 Ricinus communis 30169.m006434 I 0.764
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.764
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.760
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.760
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.758
PK28027.1 Cannabis sativa PK28027.1 I 0.755
ppa005940m Prunus persica ppa005940m I 0.755
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.754
ppa005903m Prunus persica ppa005903m I 0.754
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.750
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.749
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.749
29801.m003218 Ricinus communis 29801.m003218 I 0.749
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.744
ppa005661m Prunus persica ppa005661m I 0.744
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.744
30170.m014217 Ricinus communis 30170.m014217 I 0.744
PK00840.1 Cannabis sativa PK00840.1 I 0.740
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.740
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.739
MDP0000200455 Malus x domestica MDP0000200455 I 0.739
MDP0000136330 Malus x domestica MDP0000136330 I 0.739
PK15272.1 Cannabis sativa PK15272.1 I 0.739
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.739
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.739
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.736
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.734
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.734
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.731
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.731
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.731
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.731
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.731
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.731
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.729
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.729
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.729
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.729
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.729
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.729
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.729
mgf000380m Mimulus guttatus mgf000380m I 0.725
mgf011075m Mimulus guttatus mgf011075m I 0.725
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.725
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.725
mgf023806m Mimulus guttatus mgf023806m I 0.721
29666.m001436 Ricinus communis 29666.m001436 I 0.721
mgf010468m Mimulus guttatus mgf010468m I 0.721
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.720
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.716
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.716
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.715
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.715
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.715
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.715
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.715
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.710
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.707
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.707
ppa006577m Prunus persica ppa006577m I 0.707
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.707
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.706
Sb02g026820 Sorghum bicolor Sb02g026820 I 0.705
PK10695.1 Cannabis sativa PK10695.1 I 0.705
GRMZM2G467907 Zea mays GRMZM2G467907 I 0.705
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.705
MDP0000294628 Malus x domestica MDP0000294628 I 0.700
chr6.CM0139.780.nd Lotus japonicus chr6.CM0139.780.nd I 0.700
LOC_Os09g28810 Oryza sativa LOC_Os09g28810 I 0.700
GRMZM2G168163 Zea mays GRMZM2G168163 I 0.700
mgf012795m Mimulus guttatus mgf012795m I 0.700