GSVIVG00025280001 (Vitis vinifera)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 GSVIVG00025280001 T44728_0.6 Ensembl (2011-Oct-26) Link out

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.784
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
GSVIVT00025280001 RRM 43 113
GSVIVT00025280001 RRM 136 207
GSVIVT00025280001 RRM 255 319

Links

Other RRM family RBPs
Other Vitis vinifera RBPs

39 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.913
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.913
PK28027.1 Cannabis sativa PK28027.1 I 0.909
30169.m006434 Ricinus communis 30169.m006434 I 0.904
ppa005940m Prunus persica ppa005940m I 0.885
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.880
MDP0000276227 Malus x domestica MDP0000276227 I 0.875
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.851
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.841
SB01G045570 Sorghum bicolor Sb01g045570 I 0.827
mgf023806m Mimulus guttatus mgf023806m I 0.822
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.817
Glyma11g14150.1 Glycine max Glyma11g14150.1 N 0.812
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.808
XM_002871835.1 Arabidopsis lyrata fgenesh2_kg.6__1954__AT5G19350.2 N 0.803
Glyma12g06120.1 Glycine max Glyma12g06120.1 N 0.793
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.788
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.784
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.784
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.779
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.774
MDP0000123012 Malus x domestica MDP0000123012 N 0.774
MDP0000123414 Malus x domestica MDP0000123414 N 0.769
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.750
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.726
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.726
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.721
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.716
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.716
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.707
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.707
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.707
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.707
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.702
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.702
mgf010468m Mimulus guttatus mgf010468m I 0.702
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.702
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.702
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.702