estExt_Genewise1.C_3910068 (Physcomitrella patens)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 estExt_Genewise1.C_3910068 T51258_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.990
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
estExt_Genewise1.C_3910068 RRM 45 114
estExt_Genewise1.C_3910068 RRM 138 209
estExt_Genewise1.C_3910068 RRM 259 323

Links

Other RRM family RBPs
Other Physcomitrella patens RBPs

72 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.990
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.990
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.797
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.774
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.774
30169.m006434 Ricinus communis 30169.m006434 I 0.764
SB01G045570 Sorghum bicolor Sb01g045570 I 0.764
MDP0000276227 Malus x domestica MDP0000276227 I 0.760
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.760
fgenesh1_pm.C_scaffold_35000004 Selaginella moellendorfii fgenesh1_pm.C_scaffold_35000004 I 0.755
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.755
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.750
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.749
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.749
ppa005940m Prunus persica ppa005940m I 0.745
PK28027.1 Cannabis sativa PK28027.1 I 0.745
ppa005661m Prunus persica ppa005661m I 0.744
B9N4W3_POPTR Populus trichocarpa POPTR_0004s15080 I 0.744
ppa005903m Prunus persica ppa005903m I 0.744
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.744
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.740
B9HRX8_POPTR Populus trichocarpa POPTR_0009s10820 I 0.739
B9MVK8_POPTR Populus trichocarpa POPTR_0014s03390 I 0.739
29801.m003218 Ricinus communis 29801.m003218 I 0.739
e_gw1.23.771.1 Selaginella moellendorfii e_gw1.23.771.1 I 0.736
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.736
PK15272.1 Cannabis sativa PK15272.1 I 0.734
cassava35506.valid.m1 Manihot esculenta cassava35506.valid.m1 I 0.734
MDP0000200455 Malus x domestica MDP0000200455 I 0.734
MDP0000136330 Malus x domestica MDP0000136330 I 0.734
30170.m014217 Ricinus communis 30170.m014217 I 0.734
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.734
PK00840.1 Cannabis sativa PK00840.1 I 0.731
Glyma17g01800.1 Glycine max Glyma17g01800.1 I 0.729
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.726
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.726
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.726
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.726
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.726
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.726
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.725
Glyma17g36330.1 Glycine max Glyma17g36330.1 I 0.725
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.725
Glyma14g08840.1 Glycine max Glyma14g08840.1 I 0.725
Cucsa.123510 Cucumis sativus Cucsa.123510 I 0.721
Cucsa.232650 Cucumis sativus Cucsa.232650 I 0.720
Glyma13g27570.1 Glycine max Glyma13g27570.1 I 0.720
mgf000380m Mimulus guttatus mgf000380m I 0.720
B9GNX9_POPTR Populus trichocarpa POPTR_0002s12960 I 0.720
XM_002894151.1 Arabidopsis lyrata fgenesh2_kg.1__4049__AT1G49600.1 I 0.720
chr4.CM0079.170.nc Lotus japonicus chr4.CM0079.170.nc I 0.720
Glyma07g38940.1 Glycine max Glyma07g38940.1 I 0.720
chr5.CM0089.1140.nc Lotus japonicus chr5.CM0089.1140.nc I 0.720
mgf023806m Mimulus guttatus mgf023806m I 0.716
29666.m001436 Ricinus communis 29666.m001436 I 0.716
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.715
Glyma15g11380.1 Glycine max Glyma15g11380.1 I 0.715
mgf011075m Mimulus guttatus mgf011075m I 0.715
ATRBP47A Arabidopsis thaliana AT1G49600-TAIR-G I 0.715
mgf010468m Mimulus guttatus mgf010468m I 0.712
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.712
Medtr3g148180 Medicago truncatula Medtr3g148180 I 0.710
ppa006577m Prunus persica ppa006577m I 0.707
Medtr4g129250 Medicago truncatula Medtr4g129250 I 0.705
ATRBP47B Arabidopsis thaliana AT3G19130-TAIR-G I 0.705
GSVIVG00009558001 Vitis vinifera GSVIVG00009558001 I 0.705
A9PGI8_POPTR Populus trichocarpa POPTR_0001s45000 I 0.702
cassava35906.valid.m1 Manihot esculenta cassava35906.valid.m1 I 0.702
XM_002867483.1 Arabidopsis lyrata scaffold_701590.1 I 0.702
Glyma06g04100.1 Glycine max Glyma06g04100.1 I 0.701
XM_002885248.1 Arabidopsis lyrata fgenesh2_kg.3__2129__AT3G19130.1 I 0.700
PK10695.1 Cannabis sativa PK10695.1 I 0.700