fgenesh1_pm.C_scaffold_35000004 (Selaginella moellendorfii)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 fgenesh1_pm.C_scaffold_35000004 T52079_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
gw1.219.6.1_CONSTRUCT
M199_0.6 		RNAcompete CONSTRUCTS UGUUUUD RNAcompete
Ray et al.(2013)
RNCMPT00229 		0.768
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pm.C_scaffold_35000004 RRM 30 99
fgenesh1_pm.C_scaffold_35000004 RRM 123 194
fgenesh1_pm.C_scaffold_35000004 RRM 268 332

Links

Other RRM family RBPs
Other Selaginella moellendorfii RBPs

35 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
gw1.219.6.1 Physcomitrella patens gw1.219.6.1 I 0.760
gw1.339.2.1 Physcomitrella patens gw1.339.2.1 I 0.760
estExt_Genewise1.C_3910068 Physcomitrella patens estExt_Genewise1.C_3910068 I 0.755
GSVIVG00025280001 Vitis vinifera GSVIVG00025280001 I 0.750
fgenesh2_pg.C_scaffold_39000056 Selaginella moellendorfii fgenesh2_pg.C_scaffold_39000056 I 0.750
Cucsa.301810 Cucumis sativus Cucsa.301810 I 0.750
MDP0000276227 Malus x domestica MDP0000276227 I 0.750
PK28027.1 Cannabis sativa PK28027.1 I 0.745
SB01G045570 Sorghum bicolor Sb01g045570 I 0.745
ppa005940m Prunus persica ppa005940m I 0.740
B9HNV7_POPTR Populus trichocarpa POPTR_0009s05920 I 0.740
cassava2135.valid.m1 Manihot esculenta cassava2135.valid.m1 I 0.736
BRADI1G73030 Brachypodium distachyon BRADI1G73030 I 0.736
30169.m006434 Ricinus communis 30169.m006434 I 0.736
GRMZM2G142557 Zea mays GRMZM2G142557 I 0.736
Medtr2g117480 Medicago truncatula Medtr2g117480 I 0.736
GSVIVG00031780001 Vitis vinifera GSVIVG00031780001 I 0.726
mgf023806m Mimulus guttatus mgf023806m I 0.721
LOC_Os03g07800 Oryza sativa LOC_Os03g07800 I 0.721
Cucsa.085910 Cucumis sativus Cucsa.085910 I 0.716
Glyma13g41500.1 Glycine max Glyma13g41500.1 I 0.716
Cucsa.085920 Cucumis sativus Cucsa.085920 I 0.712
Glyma04g03950.1 Glycine max Glyma04g03950.1 I 0.707
29801.m003218 Ricinus communis 29801.m003218 I 0.705
cassava37002.valid.m1 Manihot esculenta cassava37002.valid.m1 I 0.702
cassava37003.valid.m1 Manihot esculenta cassava37003.valid.m1 I 0.702
Glyma02g15190.1 Glycine max Glyma02g15190.1 I 0.702
cassava37001.valid.m1 Manihot esculenta cassava37001.valid.m1 I 0.702
Glyma07g33300.1 Glycine max Glyma07g33300.1 I 0.702
30170.m014217 Ricinus communis 30170.m014217 I 0.702
AT5G19350 Arabidopsis thaliana AT5G19350-TAIR-G N 0.702
cassava1152.valid.m1 Manihot esculenta cassava1152.valid.m1 I 0.702
ATRBP45A Arabidopsis thaliana AT5G54900-TAIR-G N 0.702
cassava36999.valid.m1 Manihot esculenta cassava36999.valid.m1 I 0.702
cassava37000.valid.m1 Manihot esculenta cassava37000.valid.m1 I 0.702