CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Ame_R013192
(
Ailuropoda melanoleuca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Ame_R013192
T55599_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ame_R013192
RRM
9
41
CYLLAFVTLLNGEQAQSAIQMFHQYSFRGKDLI
Ame_R013192
RRM
51
120
LCITNLPTSFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGKQLGASAL
Ame_R013192
RRM
140
210
LCIDKLPSDYRDSEELLQFFSNIHKPVFCQLAQDEGSYIGGFAVVEYNSAEHAEEVQQAADGMTIKGSKVQ
Links
Other
RRM
family RBPs
Other
Ailuropoda melanoleuca
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RAVER2
Bos taurus
ENSBTAG00000030686
N
0.931
RAVER2
Choloepus hoffmanni
ENSCHOG00000007668
N
0.926
RAVER2
Canis familiaris
ENSCAFG00000018617
N
0.913
RAVER2
Pteropus vampyrus
ENSPVAG00000007172
N
0.891
RAVER2
Equus caballus
ENSECAG00000022014
N
0.888
RAVER2
Gorilla gorilla
ENSGGOG00000016447
N
0.880
RAVER2
Loxodonta africana
ENSLAFG00000012508
N
0.862
RAVER2
Tupaia belangeri
ENSTBEG00000009004
N
0.859
RAVER2
Tarsius syrichta
ENSTSYG00000006019
N
0.858
Raver2
Dipodomys ordii
ENSDORG00000002498
N
0.823
RAVER2
Otolemur garnettii
ENSOGAG00000011157
N
0.800
ENSPPYG00000001271
Pongo pygmaeus
ENSPPYG00000001271
N
0.795
RAVER2
Pan troglodytes
ENSPTRG00000000824
N
0.795
RAVER2
Macaca mulatta
ENSMMUG00000018565
N
0.790
RAVER2
Monodelphis domestica
ENSMODG00000001242
N
0.787
LOC100406727
Callithrix jacchus
ENSCJAG00000016724
N
0.783
RAVER2
Homo sapiens
ENSG00000162437
N
0.780
Raver2
Rattus norvegicus
ENSRNOG00000023812
N
0.751
Raver2
Mus musculus
ENSMUSG00000035275
N
0.751
RAVER2
Oryctolagus cuniculus
ENSOCUG00000006221
N
0.723