chr2.CM0031.350.nc (Lotus japonicus)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 chr2.CM0031.350.nc T55825_0.6 Superfamily (2011-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No RBPs with similar RNA binding domains

RNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0031.350.nc RRM 188 257
chr2.CM0031.350.nc RRM 284 353

Links

Other RRM family RBPs
Other Lotus japonicus RBPs

33 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Glyma02g44330.1 Glycine max Glyma02g44330.1 N 0.900
Medtr5g095270 Medicago truncatula Medtr5g095270 N 0.879
Glyma14g04480.1 Glycine max Glyma14g04480.1 N 0.871
PK11606.1 Cannabis sativa PK11606.1 N 0.814
cassava22354.valid.m1 Manihot esculenta cassava22354.valid.m1 N 0.793
GSVIVG00037491001 Vitis vinifera GSVIVG00037491001 N 0.793
cassava22355.valid.m1 Manihot esculenta cassava22355.valid.m1 N 0.793
cassava22353.valid.m1 Manihot esculenta cassava22353.valid.m1 N 0.793
cassava22357.valid.m1 Manihot esculenta cassava22357.valid.m1 N 0.779
cassava22358.valid.m1 Manihot esculenta cassava22358.valid.m1 N 0.779
ppa004648m Prunus persica ppa004648m N 0.750
MDP0000905699 Malus x domestica MDP0000905699 N 0.743
MDP0000218409 Malus x domestica MDP0000218409 N 0.743
AT2G41060 Arabidopsis thaliana AT2G41060-TAIR-G N 0.736
MDP0000792725 Malus x domestica MDP0000792725 N 0.736
Cucsa.250370 Cucumis sativus Cucsa.250370 N 0.736
MDP0000381936 Malus x domestica MDP0000381936 N 0.736
Glyma19g30250.1 Glycine max Glyma19g30250.1 N 0.736
XM_002879859.1 Arabidopsis lyrata scaffold_402914.1 N 0.736
mgf005672m Mimulus guttatus mgf005672m N 0.721
Glyma03g27290.1 Glycine max Glyma03g27290.1 N 0.721
mgf002509m Mimulus guttatus mgf002509m N 0.721
mgf012484m Mimulus guttatus mgf012484m N 0.721
cassava8977.m1 Manihot esculenta cassava8977.m1 N 0.714
30099.m001684 Ricinus communis 30099.m001684 N 0.714
B9HDH2_POPTR Populus trichocarpa POPTR_0006s02650 N 0.714
B9IHG4_POPTR Populus trichocarpa POPTR_0016s02440 N 0.707
GRMZM2G132465 Zea mays GRMZM2G132465 N 0.707
30006.m000276 Ricinus communis 30006.m000276 N 0.707
PK27017.1 Cannabis sativa PK27017.1 N 0.707
Medtr7g104960 Medicago truncatula Medtr7g104960 N 0.700
BGIOSIBCE001249 Oryza indica BGIOSIBCE001249 N 0.700
LOC_Os01g16090 Oryza sativa LOC_Os01g16090 N 0.700