CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PMAA_072470
(
Penicillium marneffei
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PMAA_072470
T58296_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.887
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PMAA_072470.t1
RRM
241
311
LFVGNLAGEVTDDSLKKAFSKYPSIQKARVIRDKRTEKSRGYGFISFSDGDDYFKAGREMQGKYIGSHPIL
Links
Other
RRM
family RBPs
Other
Penicillium marneffei
RBPs
43 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.901
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.901
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.901
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.901
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.901
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.887
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.887
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.887
MCYG_08625
Microsporum canis
MCYG_08625
I
0.887
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.873
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.873
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.873
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.873
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.873
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.873
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.873
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.873
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.873
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.859
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.859
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.845
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.845
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.803
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.803
Pc12g10950
Penicillium chrysogenum
Pc12g10950
I
0.789
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.761
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.761
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.746
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.746
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.732
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.732
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.732
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.732
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.732
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.732
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.732
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.732
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.718
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.718
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.704
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.704
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.704
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.704