CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Pc12g10950
(
Penicillium chrysogenum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pc12g10950
T57966_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
CADANIAG00004740
M241_0.6
Aspergillus nidulans
UACUAMK
RNAcompete
Ray et al.(2013)
RNCMPT00287
0.803
For this family, RBPs with RBD identity >
0.7
will likely have a similar motif
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pc12g10950.t1
RRM
221
291
LFVGNLAGEVTDESLLKAFSRYPSVQKARVIREKRTQKSKGYGFVSFSGSDDYFRAGKDMEGKYIGSHPIQ
Links
Other
RRM
family RBPs
Other
Penicillium chrysogenum
RBPs
48 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NFIA_053730
Neosartorya fischeri
CADNFIAG00004585
I
0.845
AFUA_6G08040
Aspergillus fumigatus
CADAFUAG00002290
I
0.845
ACLA_082600
Aspergillus clavatus
CADACLAG00007506
I
0.831
MCYG_08625
Microsporum canis
MCYG_08625
I
0.817
An11g02050
Aspergillus niger
CADANGAG00008541
I
0.817
PABG_01757
Paracoccidioides brasiliensis
PABG_01757
I
0.817
fgenesh1_pm.00118_#_519
Aspergillus carbonarius
fgenesh1_pm.00118_#_519
I
0.803
GSTUMT00010522001
Tuber melanosporum
GSTUMT00010522001
I
0.803
TEQG_04534
Trichophyton equinum
TEQG_04534
I
0.803
AFLA_036830
Aspergillus flavus
CADAFLAG00003057
I
0.803
UREG_01087
Uncinocarpus reesii
UREG_01087
I
0.803
TRV_04123
Trichophyton verrucosum
TRV_04123
I
0.803
TESG_08545
Trichophyton tonsurans
TESG_08545
I
0.803
TERG_02769
Trichophyton rubrum
TERG_02769
I
0.803
HCAG_05883
Histoplasma capsulatum
HCAG_05883
I
0.803
BDBG_03382
Blastomyces dermatitidis
BDBG_03382
I
0.803
ARB_07912
Arthroderma benhamiae
ARB_07912
I
0.803
CADANIAG00004740
Aspergillus nidulans
CADANIAG00004740
D
0.803
CIMG_01152
Coccidioides immitis
CIMG_01152
I
0.803
CPSG_02060
Coccidioides posadasii
CPSG_02060
I
0.803
AO090003000122
Aspergillus oryzae
CADAORAG00000798
I
0.803
e_gw1.3.1071.1
Trichoderma reesei
e_gw1.3.1071.1
I
0.789
ATEG_05852
Aspergillus terreus
CADATEAG00002953
I
0.789
e_gw1.1.2591.1
Trichoderma atroviride
e_gw1.1.2591.1
I
0.789
SS1G_09871
Sclerotinia sclerotiorum
SS1G_09871
I
0.789
PMAA_072470
Penicillium marneffei
PMAA_072470
I
0.789
BC1G_02746
Botrytis cinerea
BC1G_02746
I
0.789
GLRG_01583
Colletotrichum graminicola
GLRG_01583
I
0.789
gw1.33.170.1
Trichoderma virens
gw1.33.170.1
I
0.775
FGSG_11902
Fusarium graminearum
FGSG_11902
I
0.761
FVEG_01237
Fusarium verticillioides
FVEG_01237
I
0.761
fgenesh1_pg.sca_1_chr1_3_0000264
Nectria haematococca
fgenesh1_pg.sca_1_chr1_3_0000264
I
0.761
MGG_01274
Magnaporthe oryzae
MGG_01274
I
0.761
FOXG_00280
Fusarium oxysporum
FOXG_00280
I
0.761
gw1.6.1720.1
Cryphonectria parasitica
gw1.6.1720.1
I
0.746
VDAG_04412
Verticillium dahliae
VDAG_04412
I
0.746
EAT76715.1
Phaeosphaeria nodorum
EAT76715.1
I
0.732
SNOG_15877
Stagonospora nodorum
SNOG_15877
I
0.732
Pa_1_11770
Podospora anserina
Pa_1_11770
I
0.732
estExt_fgenesh3_kg.C_70295
Neurospora discreta
estExt_fgenesh3_kg.C_70295
I
0.732
NCU03099
Neurospora crassa
NCU03099
I
0.732
estExt_fgenesh1_pg.C_20919
Myceliophthora thermophila
estExt_fgenesh1_pg.C_20919
I
0.732
estExt_Genewise1Plus.C_13260
Thielavia terrestris
estExt_Genewise1Plus.C_13260
I
0.732
estExt_Genewise1Plus.C_50687
Neurospora tetrasperma
estExt_Genewise1Plus.C_50687
I
0.732
estExt_Genewise1.C_320079
Cochliobolus heterostrophus C5
estExt_Genewise1.C_320079
I
0.718
CHGG_00842
Chaetomium globosum
CHGG_00842
I
0.718
PTRG_02274
Pyrenophora tritici repentis
PTRG_02274
I
0.718
AB09441.1
Alternaria brassicicola
AB09441.1
I
0.718